Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15710 | Canola | cytosol | 93.75 | 91.98 |
| CDY27615 | Canola | cytosol | 75.0 | 73.58 |
| CDX84923 | Canola | cytosol | 73.56 | 73.56 |
| CDX90082 | Canola | cytosol | 65.38 | 65.38 |
| CDY11814 | Canola | cytosol | 63.46 | 63.46 |
| AT1G27390.1 | Thale cress | cytosol | 63.46 | 62.86 |
| KRH31475 | Soybean | mitochondrion | 51.44 | 53.23 |
| PGSC0003DMT400052223 | Potato | cytosol | 51.92 | 52.68 |
| Solyc02g068130.2.1 | Tomato | plastid | 51.44 | 52.45 |
| Solyc02g094140.2.1 | Tomato | cytosol | 50.48 | 51.47 |
| KRG97423 | Soybean | cytosol | 52.4 | 50.23 |
| CDY34181 | Canola | cytosol | 42.79 | 44.72 |
| EES01977 | Sorghum | cytosol | 43.27 | 44.34 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 43.27 | 44.34 |
| Zm00001d012017_P002 | Maize | mitochondrion | 42.79 | 44.06 |
| PGSC0003DMT400056935 | Potato | cytosol | 40.38 | 43.75 |
| CDY28496 | Canola | cytosol | 42.31 | 43.56 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 15.87 | 43.42 |
| PGSC0003DMT400056939 | Potato | cytosol | 34.62 | 42.6 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 42.31 | 41.9 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 41.83 | 41.63 |
| TraesCS3B01G467700.1 | Wheat | golgi | 41.35 | 41.15 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 39.9 | 41.09 |
| Zm00001d040209_P001 | Maize | cytosol | 26.44 | 33.74 |
| CDY35747 | Canola | cytosol | 18.27 | 29.69 |
| HORVU3Hr1G094550.2 | Barley | plastid | 23.08 | 21.43 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 13.94 | 17.68 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:A0A078EWJ3 | EnsemblPlants:CDY03918 | ProteinID:CDY03918 | ProteinID:CDY03918.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0045040 | EnsemblPlantsGene:GSBRNA2T00117412001 | InterPro:IPR011990 | PFAM:PD102047 |
| PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0004EEC7F1 | SEG:seg | : | : | : | : |
Description
BnaC07g11430D
Coordinates
chrLK031947:-:794913..796555
Molecular Weight (calculated)
22494.7 Da
IEP (calculated)
4.893
GRAVY (calculated)
-0.367
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSAADFDR LMMVDLARNA CEEQYKKDPL DSENLQKWGG ALLELSQFQS VADAKLMLDD ALSKFEEVLT INPGKHQALW CLGNAYSSQA FLNPDSDVAQ
101: GLFDKAADYF ERAGNMDPGN EMYLKSMEVA TEGPKLHKEI HKHGGMMQQA LAGGGGAGPS ASSNAGGGKN KKKNNDFTYD VCGWIILAFG IVAWVGMAKS
201: LGPPPPAR
101: GLFDKAADYF ERAGNMDPGN EMYLKSMEVA TEGPKLHKEI HKHGGMMQQA LAGGGGAGPS ASSNAGGGKN KKKNNDFTYD VCGWIILAFG IVAWVGMAKS
201: LGPPPPAR
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.