CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82614
CDX84923
CDX90082
CDY03366
CDY03918
CDY11814
CDY15710
CDY21581
CDY27615
CDY28496
CDY34181
CDY39135
CDY66507

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	CDX84923	AT1G27390.1	17981999
AT3G20000.1	CDX90082	AT1G27390.1	17981999
AT3G20000.1	CDY03918	AT1G27390.1	17981999
AT3G20000.1	CDY11814	AT1G27390.1	17981999
AT3G20000.1	CDY15710	AT1G27390.1	17981999
AT3G20000.1	CDY27615	AT1G27390.1	17981999
AT3G20000.1	CDX82614	AT2G19080.1	17981999
AT3G20000.1	CDY03366	AT2G19080.1	17981999
AT3G20000.1	CDY39135	AT2G19080.1	17981999
AT3G20000.1	CDY66507	AT2G19080.1	17981999
AT3G20000.1	CDY28496	AT3G27080.1	17981999
AT3G20000.1	CDY34181	AT3G27080.1	17981999
AT3G20000.1	CDY21581	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038249.1-P	Field mustard	cytosol	99.35	99.35
CDY33440	Canola	cytosol	99.03	99.03
CDX82267	Canola	cytosol	86.13	86.41
CDY36066	Canola	cytosol	85.81	86.08
AT3G20000.1	Thale cress	cytosol	83.87	84.14
CDY24571	Canola	cytosol	77.74	77.99
CDY25368	Canola	cytosol	77.1	77.35
VIT_03s0097g00590.t01	Wine grape	cytosol	75.16	75.4
Solyc06g007710.2.1	Tomato	plastid	74.52	73.57
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	73.87	73.4
KRH60449	Soybean	mitochondrion	71.61	72.08
KRH41747	Soybean	mitochondrion	71.94	71.94
PGSC0003DMT400051986	Potato	cytosol, plastid	15.48	65.75
GSMUA_Achr8P01650_001	Banana	plastid	67.42	64.71
EER94935	Sorghum	cytosol, plastid	69.35	64.56
Zm00001d028971_P001	Maize	cytosol	69.35	64.37
Zm00001d047566_P008	Maize	cytosol	68.39	63.66
Os03t0323800-01	Rice	cytosol, mitochondrion	68.71	63.2
HORVU4Hr1G051720.1	Barley	cytosol	68.06	62.8
TraesCS4A01G129200.1	Wheat	plastid	68.06	62.8
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	67.74	62.5
TraesCS4B01G175300.1	Wheat	cytosol	67.74	62.5
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	66.77	61.98
GSMUA_Achr10P...	Banana	extracellular, vacuole	37.1	61.17
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	63.87	56.41
KXG32258	Sorghum	plastid	59.68	54.9
CDY37141	Canola	cytosol	55.81	54.06
TraesCS3A01G188600.1	Wheat	cytosol	58.39	54.03
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	58.06	53.89
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	57.74	53.59
Zm00001d008242_P001	Maize	mitochondrion	57.74	52.96
CDY22793	Canola	cytosol	54.52	52.81
GSMUA_Achr10P...	Banana	plastid	36.45	52.8
HORVU3Hr1G039040.6	Barley	mitochondrion	59.03	50.27
Zm00001d040440_P001	Maize	plastid	28.06	47.54
Os01t0276200-00	Rice	mitochondrion	54.84	41.06

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:A0A078HZM1	UniProt:A0A078HZM1	EnsemblPlants:CDY42223	ProteinID:CDY42223
ProteinID:CDY42223.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00074439001
InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
InterPro:Tom40	UniParc:UPI0004EDE73E	:	:	:	:

Description

BnaA01g25720DBnaA01g25720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZM1]

Coordinates

chrLK032518:+:229574..232448

Molecular Weight (calculated)

34363.1 Da

IEP (calculated)

7.724

GRAVY (calculated)

-0.241

Length

310 amino acids

Sequence
(BLAST)

001: MADLFPPLVT AQIDGKPPKA DEKVDYSNLP CPVPYDELHR EAYMSLKSET FEGLRFDFSK GLNQRFSLSH SVMMGPTEVP SQSPDTTIKI PTAHYEFGAN
101: YFDPKLMLVG RVMTDGRLNA RLKADLSDKL ILKANAQLTG EPHMSHAVFN FDYMGKDYRA QLQLGNSALV GATYIQSVTP RLSLGGEVFW AGVPRKSGIG
201: YAARYETDQM VASAQVASTG NVVMNYVQKI SEKVSLATDF VYNYFSRDVV ASVGYDYILR QSRVRGKIDS NGVTSALLEE RLSMGLNFLL SAEVDHKKKD
301: YKFGFGLTVG

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.