CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01977
KXG30729
OQU75905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	EES01977	AT1G27390.1	17981999
AT3G20000.1	OQU75905	AT2G19080.1	17981999
AT3G20000.1	EES01977	AT3G27080.1	17981999
AT3G20000.1	KXG30729	AT5G09420.1	17981999
AT3G20000.1	EES01977	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008242_P001	Maize	mitochondrion	92.58	92.31
Zm00001d040440_P001	Maize	plastid	44.51	81.97
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	68.55	69.16
VIT_03s0097g00590.t01	Wine grape	cytosol	62.61	68.28
GSMUA_Achr8P01650_001	Banana	plastid	65.28	68.11
EER94935	Sorghum	cytosol, plastid	67.06	67.87
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	66.47	67.07
TraesCS3A01G188600.1	Wheat	cytosol	66.47	66.87
GSMUA_Achr10P...	Banana	extracellular, vacuole	37.09	66.49
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	65.58	66.17
KRH60449	Soybean	mitochondrion	59.64	65.26
Solyc06g007710.2.1	Tomato	plastid	59.64	64.01
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	58.75	63.46
KRH41747	Soybean	mitochondrion	58.16	63.23
HORVU3Hr1G039040.6	Barley	mitochondrion	67.36	62.36
CDX82267	Canola	cytosol	55.49	60.52
AT3G20000.1	Thale cress	cytosol	55.19	60.19
CDY36066	Canola	cytosol	55.19	60.19
CDY33440	Canola	cytosol	55.19	60.0
CDY42223	Canola	cytosol	54.9	59.68
Bra038249.1-P	Field mustard	cytosol	54.6	59.35
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	61.13	58.69
AT1G50400.1	Thale cress	cytosol	53.41	58.06
PGSC0003DMT400051986	Potato	cytosol, plastid	12.17	56.16
CDY24571	Canola	cytosol	51.04	55.66
GSMUA_Achr10P...	Banana	plastid	35.01	55.14
Bra035826.1-P	Field mustard	cytosol	50.15	54.69
CDY25368	Canola	cytosol	49.85	54.37
Os01t0276200-00	Rice	mitochondrion	63.8	51.93
CDY37141	Canola	cytosol	46.29	48.75
Bra018846.1-P	Field mustard	cytosol	45.4	47.81
CDY22793	Canola	cytosol	45.1	47.5

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	UniProt:A0A1B6Q2V1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150
GO:GO:0055085	InterPro:IPR023614	EnsemblPlants:KXG32258	ProteinID:KXG32258	ProteinID:KXG32258.1	PFAM:PF01459
PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	EnsemblPlantsGene:SORBI_3003G130000	InterPro:Tom40
UniParc:UPI00081AC3FA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:12164325..12170665

Molecular Weight (calculated)

37424.6 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.357

Length

337 amino acids

Sequence
(BLAST)

001: MGSSVSQAGA PPPPPPTYAS TPPPFAPAAA DAAFATPPPK PHEEEATEEK VDYLNLPCPV PYEEIQREAF MALKPDLFEG MRFDFTKMIT PCFALSHSVY
101: MGSTEIPAQG NDVIKVPTSN YEFGANFINQ KTMLMGRISH DGRENIRVKH DITDYLSLKI NAQLTSEPHY SQGMLNFDYK GKDFRSQIQF GNNGFYGANY
201: IQSVTKNLSL GTEAFWLGQQ RKSGVGVVAR YDTKKMVATA QIATTGMVAL SYVQKVSEKV SLASDFMYNQ MTKDVTATFG YDYMLRQCRL RGKLDTNGVI
301: SALLEERLTP GVTFQLSAEL DHWKKDYKFG FGMALGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.