Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- plastid 2
- cytosol 1
- peroxisome 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P15670_001 | |
| GSMUA_Achr8P00730_001 | |
| GSMUA_Achr9P14860_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20000.1 | GSMUA_Achr8P00730_001 | AT1G27390.1 | 17981999 |
| AT3G20000.1 | GSMUA_Achr1P15670_001 | AT2G19080.1 | 17981999 |
| AT3G20000.1 | GSMUA_Achr8P00730_001 | AT3G27080.1 | 17981999 |
| AT3G20000.1 | GSMUA_Achr9P14860_001 | AT5G09420.1 | 17981999 |
| AT3G20000.1 | GSMUA_Achr8P00730_001 | AT5G40930.1 | 17981999 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P01650_001 | Banana | plastid | 84.13 | 87.0 |
| EER94935 | Sorghum | cytosol, plastid | 79.64 | 79.88 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 80.24 | 79.53 |
| Zm00001d028971_P001 | Maize | cytosol | 79.34 | 79.34 |
| Zm00001d047566_P008 | Maize | cytosol | 78.74 | 78.98 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 44.31 | 78.72 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 78.74 | 78.27 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 78.74 | 78.27 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 78.74 | 78.27 |
| TraesCS4A01G129200.1 | Wheat | plastid | 78.74 | 78.27 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 72.16 | 77.99 |
| Solyc06g007710.2.1 | Tomato | plastid | 70.06 | 74.52 |
| KRH41747 | Soybean | mitochondrion | 69.16 | 74.52 |
| KRH60449 | Soybean | mitochondrion | 68.26 | 74.03 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 77.25 | 73.5 |
| GSMUA_Achr10P... | Banana | plastid | 47.01 | 73.36 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 67.66 | 72.44 |
| KXG32258 | Sorghum | plastid | 69.16 | 68.55 |
| Zm00001d008242_P001 | Maize | mitochondrion | 68.86 | 68.05 |
| CDY33440 | Canola | cytosol | 62.28 | 67.1 |
| CDY42223 | Canola | cytosol | 61.98 | 66.77 |
| Bra038249.1-P | Field mustard | cytosol | 61.38 | 66.13 |
| AT3G20000.1 | Thale cress | cytosol | 61.08 | 66.02 |
| CDY36066 | Canola | cytosol | 61.08 | 66.02 |
| CDX82267 | Canola | cytosol | 60.78 | 65.7 |
| TraesCS3A01G188600.1 | Wheat | cytosol | 63.17 | 62.99 |
| TraesCS3D01G192000.1 | Wheat | cytosol, nucleus, peroxisome | 62.87 | 62.87 |
| TraesCS3B01G217800.1 | Wheat | cytosol, nucleus, peroxisome | 62.28 | 62.28 |
| AT1G50400.1 | Thale cress | cytosol | 57.19 | 61.61 |
| CDY24571 | Canola | cytosol | 56.89 | 61.49 |
| Bra035826.1-P | Field mustard | cytosol | 56.59 | 61.16 |
| CDY25368 | Canola | cytosol | 56.29 | 60.84 |
| Zm00001d040440_P001 | Maize | plastid | 32.63 | 59.56 |
| HORVU3Hr1G039040.6 | Barley | mitochondrion | 63.77 | 58.52 |
| CDY37141 | Canola | cytosol | 49.1 | 51.25 |
| Bra018846.1-P | Field mustard | cytosol | 48.8 | 50.94 |
| CDY22793 | Canola | cytosol | 48.5 | 50.62 |
| Os01t0276200-00 | Rice | mitochondrion | 60.78 | 49.03 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:23.2.1.6 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008320 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030150 | GO:GO:0055085 |
| EnsemblPlantsGene:GSMUA_Achr10G12770_001 | EnsemblPlants:GSMUA_Achr10P12770_001 | EnsemblPlants:GSMUA_Achr10T12770_001 | InterPro:IPR023614 | UniProt:M0RHQ3 | PFAM:PF01459 |
| PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | InterPro:Tom40 | UniParc:UPI0002960CC9 |
| SEG:seg | : | : | : | : | : |
Description
Mitochondrial import receptor subunit TOM40 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G12770_001]
Coordinates
chr10:+:21678785..21684045
Molecular Weight (calculated)
36666.8 Da
IEP (calculated)
6.721
GRAVY (calculated)
-0.165
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSVSHAGA PPPSPAAAPP PPIPVGLAAA LPPNTEVQGD AKGVSEKVDW LNLPCPVAFE EIQREALMSL KPELFEGLRF DFTKGINQTF ALSHSVFMGS
101: MEVPSQSSDI IKVPTAHYEF GANFLDPKMM LIGRILTDGR LNARVKCDLT DNLTLKINAQ LTNEPHFSQG MFNFDYKGQD FRSQFQIGNN AFYGANYIQS
201: VSPHLSLGSE VFWLGHQRKS GIGFAARYNT DKMVTTGQVA STGIVALSYV QKVSEKVSLA SEFMYNHMTR DVTSSFGYDY ILRQCRLRGK LDSNGVVAAF
301: LEERLNMGVN LLLSAEIDHS KKDYKFGFGM TVGE
101: MEVPSQSSDI IKVPTAHYEF GANFLDPKMM LIGRILTDGR LNARVKCDLT DNLTLKINAQ LTNEPHFSQG MFNFDYKGQD FRSQFQIGNN AFYGANYIQS
201: VSPHLSLGSE VFWLGHQRKS GIGFAARYNT DKMVTTGQVA STGIVALSYV QKVSEKVSLA SEFMYNHMTR DVTSSFGYDY ILRQCRLRGK LDSNGVVAAF
301: LEERLNMGVN LLLSAEIDHS KKDYKFGFGM TVGE
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Arabidopsis Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.