Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047566_P008 | Maize | cytosol | 94.91 | 95.2 |
| EER94935 | Sorghum | cytosol, plastid | 94.91 | 95.2 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 88.92 | 88.13 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 86.23 | 85.71 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 85.93 | 85.42 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 85.63 | 85.12 |
| TraesCS4A01G129200.1 | Wheat | plastid | 84.73 | 84.23 |
| GSMUA_Achr8P01650_001 | Banana | plastid | 78.74 | 81.42 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 79.34 | 79.34 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 71.86 | 77.67 |
| Solyc06g007710.2.1 | Tomato | plastid | 69.16 | 73.57 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 41.32 | 73.4 |
| KRH41747 | Soybean | mitochondrion | 67.66 | 72.9 |
| KRH60449 | Soybean | mitochondrion | 67.07 | 72.73 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 67.37 | 72.12 |
| AT3G20000.1 | Thale cress | cytosol | 64.97 | 70.23 |
| CDY33440 | Canola | cytosol | 64.67 | 69.68 |
| CDY42223 | Canola | cytosol | 64.37 | 69.35 |
| Bra038249.1-P | Field mustard | cytosol | 64.37 | 69.35 |
| CDY36066 | Canola | cytosol | 63.47 | 68.61 |
| CDX82267 | Canola | cytosol | 63.17 | 68.28 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 71.56 | 68.09 |
| GSMUA_Achr10P... | Banana | plastid | 43.11 | 67.29 |
| Zm00001d008242_P001 | Maize | mitochondrion | 66.17 | 65.38 |
| PGSC0003DMT400051986 | Potato | cytosol, plastid | 14.07 | 64.38 |
| CDY24571 | Canola | cytosol | 58.38 | 63.11 |
| Bra035826.1-P | Field mustard | cytosol | 58.08 | 62.78 |
| AT1G50400.1 | Thale cress | cytosol | 58.08 | 62.58 |
| CDY25368 | Canola | cytosol | 57.78 | 62.46 |
| Zm00001d040440_P001 | Maize | plastid | 31.74 | 57.92 |
| CDY37141 | Canola | cytosol | 50.3 | 52.5 |
| Bra018846.1-P | Field mustard | cytosol | 49.4 | 51.56 |
| CDY22793 | Canola | cytosol | 49.1 | 51.25 |
Protein Annotations
| EntrezGene:100283111 | Gene3D:2.40.160.10 | MapMan:23.2.1.6 | UniProt:B6TEP3 | EMBL:BT088135 | EMBL:EU963458 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008320 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030150 | GO:GO:0055085 | InterPro:IPR023614 | ProteinID:ONL97518.1 |
| ProteinID:ONL97520.1 | PFAM:PF01459 | PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf |
| InterPro:Tom40 | UniParc:UPI000182D5A3 | EnsemblPlantsGene:Zm00001d028971 | EnsemblPlants:Zm00001d028971_P001 | EnsemblPlants:Zm00001d028971_T001 | SEG:seg |
Description
Mitochondrial import receptor subunit TOM40-1
Coordinates
chr1:+:53292747..53300706
Molecular Weight (calculated)
36961.4 Da
IEP (calculated)
7.533
GRAVY (calculated)
-0.243
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVASAAVP PPPPQSALPQ AGAPPYGPGL AGILPQMSKG EEKKDEKVDY LNLPCPVPFE EIQREALMSL KPELFEGLRF DFTKGLNQKF SLSHSIFMGS
101: LEVPAQASET IKVPTAHYEF GANFLDPKLM LIGRVMTDGR LNARVKCDLT DNLTLKVNAQ LTQEAHYSQG MFNFDYKGSD YRAQFQIGNN AFYGANYIQS
201: VTPNLSMGTE MFWLGHQRKS GIGFASRYNT DKMVGTLQVA STGIVALSYV QKISEKVSLA SDFMYNHMSR DVTASFGYDY LLRQCRLRGK IDSNGVVAAY
301: LEERLNMGVN FLLSAEIDHC KKNYKFGFGM TVGE
101: LEVPAQASET IKVPTAHYEF GANFLDPKLM LIGRVMTDGR LNARVKCDLT DNLTLKVNAQ LTQEAHYSQG MFNFDYKGSD YRAQFQIGNN AFYGANYIQS
201: VTPNLSMGTE MFWLGHQRKS GIGFASRYNT DKMVGTLQVA STGIVALSYV QKISEKVSLA SDFMYNHMSR DVTASFGYDY LLRQCRLRGK IDSNGVVAAY
301: LEERLNMGVN FLLSAEIDHC KKNYKFGFGM TVGE
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Arabidopsis Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.