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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 16595579
plastid: 18419817
golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 18419817 doi
FM Dupont
Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.
msms PMID: 16595579 doi
Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G429800.1
TraesCS3B01G467700.1
TraesCS3D01G425100.1
TraesCS6A01G318800.1
TraesCS6B01G349000.1
TraesCS6D01G298000.1
TraesCS7A01G130600.1
TraesCS7B01G030900.1
TraesCS7D01G130000.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G20000.1 TraesCS3A01G429800.1 AT1G27390.1 17981999
AT3G20000.1 TraesCS3B01G467700.1 AT1G27390.1 17981999
AT3G20000.1 TraesCS3D01G425100.1 AT1G27390.1 17981999
AT3G20000.1 TraesCS7A01G130600.1 AT2G19080.1 17981999
AT3G20000.1 TraesCS7B01G030900.1 AT2G19080.1 17981999
AT3G20000.1 TraesCS7D01G130000.1 AT2G19080.1 17981999
AT3G20000.1 TraesCS3A01G429800.1 AT3G27080.1 17981999
AT3G20000.1 TraesCS3B01G467700.1 AT3G27080.1 17981999
AT3G20000.1 TraesCS3D01G425100.1 AT3G27080.1 17981999
AT3G20000.1 TraesCS6A01G318800.1 AT5G09420.1 17981999
AT3G20000.1 TraesCS6B01G349000.1 AT5G09420.1 17981999
AT3G20000.1 TraesCS6D01G298000.1 AT5G09420.1 17981999
AT3G20000.1 TraesCS3A01G429800.1 AT5G40930.1 17981999
AT3G20000.1 TraesCS3B01G467700.1 AT5G40930.1 17981999
AT3G20000.1 TraesCS3D01G425100.1 AT5G40930.1 17981999
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G177200.1 Wheat cytosol, mitochondrion, unclear 98.21 98.21
TraesCS4B01G175300.1 Wheat cytosol 97.62 97.62
HORVU4Hr1G051720.1 Barley cytosol 97.62 97.62
Os03t0323800-01 Rice cytosol, mitochondrion 87.8 87.54
Zm00001d047566_P008 Maize cytosol 85.71 86.49
EER94935 Sorghum cytosol, plastid 85.42 86.19
Zm00001d028971_P001 Maize cytosol 84.23 84.73
GSMUA_Achr8P01650_001 Banana plastid 77.08 80.19
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome, plastid 78.27 78.74
VIT_03s0097g00590.t01 Wine grape cytosol 69.64 75.73
GSMUA_Achr10P... Banana extracellular, vacuole 41.07 73.4
Solyc06g007710.2.1 Tomato plastid 67.86 72.61
Solyc06g082800.2.1 Tomato cytosol, nucleus, peroxisome 67.26 72.44
KRH60449 Soybean mitochondrion 65.18 71.1
KRH41747 Soybean mitochondrion 65.48 70.97
CDY33440 Canola cytosol 63.1 68.39
GSMUA_Achr2P11550_001 Banana cytosol, extracellular, plastid, vacuole 71.13 68.09
CDY42223 Canola cytosol 62.8 68.06
AT3G20000.1 Thale cress cytosol 62.2 67.64
Bra038249.1-P Field mustard cytosol 62.2 67.42
CDX82267 Canola cytosol 61.31 66.67
CDY36066 Canola cytosol 61.31 66.67
GSMUA_Achr10P... Banana plastid 41.96 65.89
TraesCS3A01G188600.1 Wheat cytosol 65.18 65.37
AT1G50400.1 Thale cress cytosol 57.74 62.58
CDY24571 Canola cytosol 57.44 62.46
Bra035826.1-P Field mustard cytosol 57.14 62.14
CDY25368 Canola cytosol 56.85 61.81
PGSC0003DMT400051986 Potato cytosol, plastid 13.39 61.64
CDY37141 Canola cytosol 50.0 52.5
Bra018846.1-P Field mustard cytosol 49.11 51.56
CDY22793 Canola cytosol 48.81 51.25
Protein Annotations
Gene3D:2.40.160.10MapMan:23.2.1.6GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005741GO:GO:0006810GO:GO:0008150
GO:GO:0008320GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0030150GO:GO:0055085
InterPro:IPR023614PFAM:PF01459PANTHER:PTHR10802PANTHER:PTHR10802:SF2InterPro:Porin_Euk/Tom40InterPro:Porin_dom_sf
InterPro:Tom40EnsemblPlantsGene:TraesCS4A01G129200EnsemblPlants:TraesCS4A01G129200.1TIGR:cd07305SEG:seg:
Description
No Description!
Coordinates
chr4A:+:167745185..167749347
Molecular Weight (calculated)
37010.2 Da
IEP (calculated)
6.680
GRAVY (calculated)
-0.274
Length
336 amino acids
Sequence
(BLAST)
001: MGSAASAASD AAPPSPSPAQ PHGAAPPYGV GLAGILPPKP DGDDKKEEKV DYLNLPCPVP YEEIQREALM SLKPELFEGL RFDFTKMLTQ KFALSHSVLM
101: GSLEVPSQSA DVIKVPTSQY EFGANFLDPK LMLIGRLMTD GRLNARVKCD LTENLALKIN AQLTSEPHYS QGMFNFDYKG TDYRAQFQIG NNAFYGANYI
201: QSVTPNLSMG TEIFWLGQQR KSGIGFNSRY NTDKMVGTLQ VASTGIVALS YVQKVSEKVS LATDFMYNHM SRDVTSSVGY DYILRQCRLR GKVDSNGVVA
301: AYLEERLNMG VNFLLSAEID HPKKNYKFGF GMTVGE
Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Arabidopsis Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.