Factsheet for PGSC0003DMT400051986

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021961
PGSC0003DMT400042984
PGSC0003DMT400052223
PGSC0003DMT400056935
PGSC0003DMT400056939

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	PGSC0003DMT400052223	AT1G27390.1	17981999
AT3G20000.1	PGSC0003DMT400056935	AT1G27390.1	17981999
AT3G20000.1	PGSC0003DMT400056939	AT1G27390.1	17981999
AT3G20000.1	PGSC0003DMT400021961	AT2G19080.1	17981999
AT3G20000.1	PGSC0003DMT400052223	AT3G27080.1	17981999
AT3G20000.1	PGSC0003DMT400056935	AT3G27080.1	17981999
AT3G20000.1	PGSC0003DMT400056939	AT3G27080.1	17981999
AT3G20000.1	PGSC0003DMT400042984	AT5G09420.1	17981999
AT3G20000.1	PGSC0003DMT400052223	AT5G40930.1	17981999
AT3G20000.1	PGSC0003DMT400056935	AT5G40930.1	17981999
AT3G20000.1	PGSC0003DMT400056939	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	67.12	22.9
Zm00001d040440_P001	Maize	plastid	54.79	21.86
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	89.04	20.83
VIT_03s0097g00590.t01	Wine grape	cytosol	76.71	18.12
Solyc06g007710.2.1	Tomato	plastid	73.97	17.2
CDY33440	Canola	cytosol	67.12	15.81
Bra038249.1-P	Field mustard	cytosol	65.75	15.48
CDY42223	Canola	cytosol	65.75	15.48
AT3G20000.1	Thale cress	cytosol	64.38	15.21
KRH60449	Soybean	mitochondrion	63.01	14.94
KRH41747	Soybean	mitochondrion	63.01	14.84
Os03t0323800-01	Rice	cytosol, mitochondrion	67.12	14.54
EER94935	Sorghum	cytosol, plastid	64.38	14.11
Zm00001d028971_P001	Maize	cytosol	64.38	14.07
CDY25368	Canola	cytosol	58.9	13.92
Bra035826.1-P	Field mustard	cytosol	58.9	13.92
CDY24571	Canola	cytosol	58.9	13.92
CDY36066	Canola	cytosol	57.53	13.59
Zm00001d047566_P008	Maize	cytosol	61.64	13.51
TraesCS4A01G129200.1	Wheat	plastid	61.64	13.39
TraesCS4B01G175300.1	Wheat	cytosol	61.64	13.39
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	61.64	13.39
HORVU4Hr1G051720.1	Barley	cytosol	61.64	13.39
CDX82267	Canola	cytosol	56.16	13.27
CDY37141	Canola	cytosol	54.79	12.5
AT1G50400.1	Thale cress	cytosol	52.05	12.26
CDY22793	Canola	cytosol	53.42	12.19
Bra018846.1-P	Field mustard	cytosol	53.42	12.19
KXG32258	Sorghum	plastid	56.16	12.17
Zm00001d008242_P001	Maize	mitochondrion	54.79	11.83
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	49.32	10.78
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	47.95	10.48
TraesCS3A01G188600.1	Wheat	cytosol	47.95	10.45
HORVU3Hr1G039040.6	Barley	mitochondrion	52.05	10.44
Os01t0276200-00	Rice	mitochondrion	24.66	4.35

Protein Annotations

MapMan:23.2.1.6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	UniProt:M1BSL4	EnsemblPlantsGene:PGSC0003DMG402020176
PGSC:PGSC0003DMG402020176	EnsemblPlants:PGSC0003DMT400051986	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Tom40	UniParc:UPI000295F210

Description

Mitochondrial import receptor [Source:PGSC_GENE;Acc:PGSC0003DMG402020176]

Coordinates

chr6:+:58132109..58139668

Molecular Weight (calculated)

8248.0 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.300

Length

73 amino acids

Sequence
(BLAST)

1: MATLVPPAAT ASPAGSKPTV IEPEKVDYFN LPCPIPYEEI HREALMSLKP ELFEGMRFDF TRGLNQRFSL SHR

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.