Factsheet for PGSC0003DMT400052223

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000833
PGSC0003DMT400001221
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400020320
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400047670
PGSC0003DMT400050482
PGSC0003DMT400051986
PGSC0003DMT400052662
PGSC0003DMT400064369

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT3G27080.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400000833	AT2G20130.1	21798944
AT3G27080.1	PGSC0003DMT400020320	AT2G31040.1	21798944
AT3G27080.1	PGSC0003DMT400052662	AT2G31040.1	21798944
AT3G27080.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT3G27080.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT3G27080.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G27080.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT5G40930.1	PGSC0003DMT400001221	AT2G27940.1	21798944
AT5G40930.1	PGSC0003DMT400047670	AT2G46550.1	21798944
AT5G40930.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT5G40930.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G40930.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g094140.2.1	Tomato	cytosol	91.22	91.67
VIT_14s0068g02030.t01	Wine grape	cytosol	77.07	78.61
KRG94268	Soybean	nucleus	74.15	72.73
KRH57705	Soybean	nucleus	73.17	71.43
KRH31475	Soybean	mitochondrion	60.98	62.19
PGSC0003DMT400056939	Potato	cytosol	48.78	59.17
PGSC0003DMT400056935	Potato	cytosol	54.63	58.33
Bra032980.1-P	Field mustard	cytosol	56.59	58.29
CDY34181	Canola	cytosol	56.59	58.29
KRG97423	Soybean	cytosol	61.46	58.06
AT3G27080.1	Thale cress	cytosol	57.07	57.92
CDX84923	Canola	cytosol	57.07	56.25
AT5G40930.1	Thale cress	cytosol	51.22	56.15
CDY28496	Canola	cytosol	55.12	55.94
Bra032826.1-P	Field mustard	cytosol	57.56	55.66
CDY27615	Canola	cytosol	57.56	55.66
Os01t0921600-01	Rice	mitochondrion, plastid	54.15	54.95
EES01977	Sorghum	cytosol	53.66	54.19
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	52.68	53.2
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	19.51	52.63
CDY03918	Canola	cytosol	52.68	51.92
Zm00001d012017_P002	Maize	mitochondrion	50.73	51.49
AT1G27390.1	Thale cress	cytosol	52.2	50.95
CDY15710	Canola	cytosol	52.68	50.94
Bra030044.1-P	Field mustard	cytosol	52.68	50.23
TraesCS3A01G429800.1	Wheat	cytosol	50.73	49.52
TraesCS3B01G467700.1	Wheat	golgi	50.24	49.28
TraesCS3D01G425100.1	Wheat	cytosol	49.76	48.8
CDX90082	Canola	cytosol	45.37	44.71
CDY11814	Canola	cytosol	44.88	44.23
Bra010946.1-P	Field mustard	cytosol	44.39	43.54
Zm00001d040209_P001	Maize	cytosol	30.24	38.04
CDY35747	Canola	cytosol	22.93	36.72
AT3G27070.2	Thale cress	plasma membrane	40.0	33.06
HORVU3Hr1G094550.2	Barley	plastid	29.76	27.23
HORVU7Hr1G075380.6	Barley	cytosol, plastid	18.05	22.56

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102605121	MapMan:23.2.1.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0045040	InterPro:IPR011990	UniProt:M1BT09	PFAM:PD102047
PFAM:PF06552	EnsemblPlantsGene:PGSC0003DMG400020255	PGSC:PGSC0003DMG400020255	EnsemblPlants:PGSC0003DMT400052223	PANTHER:PTHR32409	SUPFAM:SSF48452
TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002966816	RefSeq:XP_006338697.1	SEG:seg

Description

Mitochondrial import receptor subunit TOM20 [Source:PGSC_GENE;Acc:PGSC0003DMG400020255]

Coordinates

chr2:+:47983144..47987190

Molecular Weight (calculated)

22678.6 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.512

Length

205 amino acids

Sequence
(BLAST)

001: MDMQSDFDRL LFFEHARKTA ETTYATDPLD AENLTRWGGA LLELSQFQSV SESKKMISDA ISKLEEALEV NPQKHDAIWC LGNAYTSHGF LNPDEDEAKV
101: YFDKAAQCFQ QAVDADPENE LYRKSFEVST KASELHAQIH KQGPLQQAMG PGPSTAATST KGSKKKKSSD LKYDIFGWVI LAVGLVAWVG FAKSNVPPPA
201: HSPPR

Best Arabidopsis Sequence Match ( AT3G27080.1 )
(BLAST)

001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR

Arabidopsis Description

TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.