CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41747
KRH60449

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	KRH41747	AT3G20000.1	17981999
AT1G27390.1	KRH60449	AT3G20000.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97423	Soybean	cytosol	95.02	88.02
KRG94268	Soybean	nucleus	69.65	66.99
KRH57705	Soybean	nucleus	68.66	65.71
Solyc02g068130.2.1	Tomato	plastid	65.17	64.22
PGSC0003DMT400052223	Potato	cytosol	62.19	60.98
Solyc02g094140.2.1	Tomato	cytosol	57.71	56.86
PGSC0003DMT400056939	Potato	cytosol	46.27	55.03
CDX84923	Canola	cytosol	55.72	53.85
Bra032826.1-P	Field mustard	cytosol	56.72	53.77
CDY27615	Canola	cytosol	56.72	53.77
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	19.9	52.63
PGSC0003DMT400056935	Potato	cytosol	49.75	52.08
AT1G27390.1	Thale cress	cytosol	54.23	51.9
EES01977	Sorghum	cytosol	52.24	51.72
CDY03918	Canola	cytosol	53.23	51.44
CDY15710	Canola	cytosol	53.73	50.94
Bra010946.1-P	Field mustard	cytosol	52.74	50.72
Os01t0921600-01	Rice	mitochondrion, plastid	50.75	50.49
CDY11814	Canola	cytosol	52.24	50.48
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	50.75	50.25
Bra030044.1-P	Field mustard	cytosol	53.73	50.23
CDX90082	Canola	cytosol	51.24	49.52
Zm00001d012017_P002	Maize	mitochondrion	49.25	49.01
TraesCS3A01G429800.1	Wheat	cytosol	48.26	46.19
TraesCS3B01G467700.1	Wheat	golgi	47.76	45.93
TraesCS3D01G425100.1	Wheat	cytosol	47.26	45.45
Zm00001d040209_P001	Maize	cytosol	29.35	36.2
HORVU3Hr1G094550.2	Barley	plastid	26.37	23.66
HORVU7Hr1G075380.6	Barley	cytosol, plastid	15.42	18.9

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	EMBL:ACUP02007145	EnsemblPlantsGene:GLYMA_11G250100	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0045040	UniProt:I1LN85	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH31475	ProteinID:KRH31475	ProteinID:KRH31475.1	PFAM:PD102047	PFAM:PF06552	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR32409	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00023CCA57	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:34185908..34189251

Molecular Weight (calculated)

22541.6 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.500

Length

201 amino acids

Sequence
(BLAST)

001: MEFSQDDFDR LLLFEHTRKT AEANYAENPQ DADNLTRWGG ALIELSSFQA PRDAKAMIDD ALSKLEESLL INPTKHDTLW CLGNANTSYA FLIPDITEAK
101: GYFDKALEYF QKAAEEDPEN DLYRKSLQVA VKAPELHMEI HKNGLGLMSN AGSSATSKEK ESKKQKSNDF KYDIFGWIIL AVGIVAWVGM AKSNIPPPPP
201: R

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.