Factsheet for PGSC0003DMT400056939

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000833
PGSC0003DMT400001221
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400020320
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400047670
PGSC0003DMT400050482
PGSC0003DMT400051986
PGSC0003DMT400052662
PGSC0003DMT400064369

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT3G27080.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400000833	AT2G20130.1	21798944
AT3G27080.1	PGSC0003DMT400020320	AT2G31040.1	21798944
AT3G27080.1	PGSC0003DMT400052662	AT2G31040.1	21798944
AT3G27080.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT3G27080.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT3G27080.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G27080.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT5G40930.1	PGSC0003DMT400001221	AT2G27940.1	21798944
AT5G40930.1	PGSC0003DMT400047670	AT2G46550.1	21798944
AT5G40930.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT5G40930.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G40930.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056935	Potato	cytosol	78.11	68.75
Solyc02g068130.2.1	Tomato	plastid	69.23	57.35
VIT_14s0068g02030.t01	Wine grape	cytosol	61.54	51.74
PGSC0003DMT400052223	Potato	cytosol	59.17	48.78
KRH57705	Soybean	nucleus	60.35	48.57
KRG94268	Soybean	nucleus	59.17	47.85
KRH31475	Soybean	mitochondrion	55.03	46.27
KRG97423	Soybean	cytosol	56.21	43.78
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	50.89	42.36
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	18.93	42.11
EES01977	Sorghum	cytosol	50.3	41.87
Zm00001d012017_P002	Maize	mitochondrion	49.7	41.58
AT5G40930.1	Thale cress	cytosol	45.56	41.18
Os01t0921600-01	Rice	mitochondrion, plastid	48.52	40.59
AT3G27080.1	Thale cress	cytosol	46.15	38.61
CDY27615	Canola	cytosol	47.93	38.21
Bra032826.1-P	Field mustard	cytosol	47.93	38.21
CDX84923	Canola	cytosol	46.75	37.98
CDY34181	Canola	cytosol	43.79	37.19
Bra032980.1-P	Field mustard	cytosol	43.79	37.19
TraesCS3D01G425100.1	Wheat	cytosol	45.56	36.84
TraesCS3B01G467700.1	Wheat	golgi	45.56	36.84
AT1G27390.1	Thale cress	cytosol	45.56	36.67
TraesCS3A01G429800.1	Wheat	cytosol	44.97	36.19
CDY28496	Canola	cytosol	43.2	36.14
CDY03918	Canola	cytosol	42.6	34.62
CDY11814	Canola	cytosol	42.01	34.13
CDX90082	Canola	cytosol	42.01	34.13
Bra010946.1-P	Field mustard	cytosol	42.01	33.97
CDY15710	Canola	cytosol	42.6	33.96
Bra030044.1-P	Field mustard	cytosol	42.6	33.49
Zm00001d040209_P001	Maize	cytosol	30.18	31.29
AT3G27070.2	Thale cress	plasma membrane	39.65	27.02
CDY35747	Canola	cytosol	20.12	26.56
HORVU3Hr1G094550.2	Barley	plastid	27.81	20.98
HORVU7Hr1G075380.6	Barley	cytosol, plastid	14.79	15.24

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102588994	MapMan:23.2.1.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0045040	InterPro:IPR011990	UniProt:M1C038	PFAM:PD102047	PFAM:PF06552	EnsemblPlantsGene:PGSC0003DMG402022140
PGSC:PGSC0003DMG402022140	EnsemblPlants:PGSC0003DMT400056939	PANTHER:PTHR32409	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296B745	RefSeq:XP_006346063.1	SEG:seg	:	:

Description

Mitochondrial import receptor subunit TOM20 [Source:PGSC_GENE;Acc:PGSC0003DMG402022140]

Coordinates

chr7:-:56214641..56217780

Molecular Weight (calculated)

18946.7 Da

IEP (calculated)

8.915

GRAVY (calculated)

-0.356

Length

169 amino acids

Sequence
(BLAST)

001: MEMLLSLERA RKSAETSYPQ NPRDGDNLAR WGRALLNLAR FEHGVESKQM ISDAISRLEK ALTLKPKKKH DVLWCLGNAY TSYGLLTTDM DAAALYFEKA
101: TMFFKQASDA DPSNDLYRKS LDAAAKISKK ESININYDIF YWVILAAGIV AWVGFAKSDM SPPPPPPPQ

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.