Factsheet for VIT_14s0068g02030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0097g00590.t01
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_11s0016g03780.t01
VIT_12s0028g02170.t01
VIT_12s0059g00270.t01
VIT_13s0064g00200.t01
VIT_15s0046g00260.t01
VIT_19s0014g03160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27080.1	VIT_12s0059g00270.t01	AT1G03630.1	21798944
AT3G27080.1	VIT_19s0014g03160.t01	AT1G03630.1	21798944
AT3G27080.1	VIT_11s0016g03780.t01	AT2G20130.1	21798944
AT3G27080.1	VIT_12s0028g02170.t01	AT2G31040.1	21798944
AT3G27080.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT3G27080.1	VIT_03s0097g00590.t01	AT3G20000.1	17981999
AT3G27080.1	VIT_13s0064g00200.t01	AT5G13720.1	21798944
AT3G27080.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT5G40930.1	VIT_15s0046g00260.t01	AT2G46550.1	21798944
AT5G40930.1	VIT_03s0097g00590.t01	AT3G20000.1	17981999
AT5G40930.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94268	Soybean	nucleus	81.59	78.47
KRH57705	Soybean	nucleus	81.59	78.1
PGSC0003DMT400052223	Potato	cytosol	78.61	77.07
Solyc02g068130.2.1	Tomato	plastid	76.12	75.0
Solyc02g094140.2.1	Tomato	cytosol	73.13	72.06
PGSC0003DMT400056939	Potato	cytosol	51.74	61.54
PGSC0003DMT400056935	Potato	cytosol	57.21	59.9
AT5G40930.1	Thale cress	cytosol	55.72	59.89
Bra032980.1-P	Field mustard	cytosol	58.21	58.79
CDY34181	Canola	cytosol	58.21	58.79
Os01t0921600-01	Rice	mitochondrion, plastid	58.71	58.42
EES01977	Sorghum	cytosol	58.71	58.13
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	21.89	57.89
AT3G27080.1	Thale cress	cytosol	57.71	57.43
CDY28496	Canola	cytosol	56.72	56.44
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	56.72	56.16
Zm00001d012017_P002	Maize	mitochondrion	55.22	54.95
TraesCS3A01G429800.1	Wheat	cytosol	55.72	53.33
TraesCS3B01G467700.1	Wheat	golgi	55.22	53.11
TraesCS3D01G425100.1	Wheat	cytosol	55.22	53.11
Zm00001d040209_P001	Maize	cytosol	35.32	43.56
AT3G27070.2	Thale cress	plasma membrane	42.79	34.68
HORVU3Hr1G094550.2	Barley	plastid	31.84	28.57
HORVU7Hr1G075380.6	Barley	cytosol, plastid	19.9	24.39

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100248125	wikigene:100248125	MapMan:23.2.1.5	ProteinID:CBI21351	ProteinID:CBI21351.3
UniProt:D7SVQ2	EMBL:FN595232	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0045040
InterPro:IPR011990	EntrezGene:LOC100248125	wikigene:LOC100248125	PFAM:PD102047	PFAM:PF06552	PANTHER:PTHR32409
SUPFAM:SSF48452	TIGR:TC62072	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C83B7
ArrayExpress:VIT_14s0068g02030	EnsemblPlantsGene:VIT_14s0068g02030	EnsemblPlants:VIT_14s0068g02030.t01	RefSeq:XP_002269795	RefSeq:XP_002269795.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:25666840..25670790

Molecular Weight (calculated)

22490.4 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.597

Length

201 amino acids

Sequence
(BLAST)

001: MDMQSDFDRL LFFEHARKTA EATYAKNPQD ADNLTRWGGA LLELSQFQSV PDSKKMIQDA ISKLEEALML NPNKHDTLWC LGNAHTSHAF LTPDQDEARD
101: YFDKASQYFQ QAVDEDPGND LYRKSLEVAA KAPELHMEIH KQGFSQQAMG AGSSTSTGTK TSKKKKSSDL KYDIFGWIIL AVGIVAWVGF AKSHVPPPPP
201: R

Best Arabidopsis Sequence Match ( AT3G27080.1 )
(BLAST)

001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR

Arabidopsis Description

TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.