Factsheet for Bra032980.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra008808.1-P
Bra020182.1-P
Bra021688.1-P
Bra023431.1-P
Bra026110.1-P
Bra027174.1-P
Bra030540.1-P
Bra033415.1-P
Bra035826.1-P
Bra038249.1-P
Bra041043.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27080.1	Bra030540.1-P	AT1G03630.1	21798944
AT3G27080.1	Bra033415.1-P	AT1G03630.1	21798944
AT3G27080.1	Bra026110.1-P	AT1G15760.1	21798944
AT3G27080.1	Bra041043.1-P	AT2G20130.1	21798944
AT3G27080.1	Bra021688.1-P	AT2G31040.1	21798944
AT3G27080.1	Bra027174.1-P	AT3G16310.1	21798944
AT3G27080.1	Bra035826.1-P	AT3G20000.1	17981999
AT3G27080.1	Bra038249.1-P	AT3G20000.1	17981999
AT3G27080.1	Bra008808.1-P	AT5G13720.1	21798944
AT3G27080.1	Bra023431.1-P	AT5G13720.1	21798944
AT3G27080.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G27080.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G27080.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34181	Canola	cytosol	100.0	100.0
AT3G27080.1	Thale cress	cytosol	64.82	63.86
VIT_14s0068g02030.t01	Wine grape	cytosol	58.79	58.21
KRG94268	Soybean	nucleus	59.8	56.94
KRH57705	Soybean	nucleus	59.8	56.67
PGSC0003DMT400052223	Potato	cytosol	58.29	56.59
Solyc02g094140.2.1	Tomato	cytosol	57.29	55.88
Solyc02g068130.2.1	Tomato	plastid	55.78	54.41
Bra032826.1-P	Field mustard	cytosol	50.75	47.64
Zm00001d012017_P002	Maize	mitochondrion	46.73	46.04
Os01t0921600-01	Rice	mitochondrion, plastid	46.23	45.54
EES01977	Sorghum	cytosol	45.23	44.34
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	45.23	44.34
PGSC0003DMT400056939	Potato	cytosol	37.19	43.79
PGSC0003DMT400056935	Potato	cytosol	42.21	43.75
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	16.58	43.42
TraesCS3B01G467700.1	Wheat	golgi	44.22	42.11
TraesCS3D01G425100.1	Wheat	cytosol	43.72	41.63
TraesCS3A01G429800.1	Wheat	cytosol	43.72	41.43
Bra030044.1-P	Field mustard	cytosol	44.22	40.93
Bra010946.1-P	Field mustard	cytosol	41.71	39.71
AT3G27070.2	Thale cress	plasma membrane	45.73	36.69
Zm00001d040209_P001	Maize	cytosol	25.63	31.29
HORVU3Hr1G094550.2	Barley	plastid	26.13	23.21
HORVU7Hr1G075380.6	Barley	cytosol, plastid	15.58	18.9

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	EnsemblPlantsGene:Bra032980	EnsemblPlants:Bra032980.1	EnsemblPlants:Bra032980.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0045040	InterPro:IPR011990	UniProt:M4EVZ7	PFAM:PD102047
PFAM:PF06552	PANTHER:PTHR32409	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00025457BE	:	:	:	:	:

Description

AT3G27080 (E=2e-071) TOM20-3 | TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven protein transmembrane transporter

Coordinates

chrA02:+:22134207..22135525

Molecular Weight (calculated)

22006.0 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.257

Length

199 amino acids

Sequence
(BLAST)

001: MDNNDAEFDA IIMFEQIRKV SEATYLKNPL DADNLTRWAG ALLELAQFHN EDPKLTVQEA ISKLEEALLI DPKKHPAIWC LGNAYTTLAF LTPEETEAKY
101: NFDLAAHFFQ VAVDEQPENE TYQKSLEMTA KAPLLHAEVH RQGFGQQPLS GAGPSGASRS KDVKSSELKY DVMGWVILAV GVVAWVGYAK ATAPISAPR

Best Arabidopsis Sequence Match ( AT3G27080.1 )
(BLAST)

001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR

Arabidopsis Description

TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.