Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G27080.1 | Thale cress | cytosol | 43.55 | 53.47 |
| Bra032980.1-P | Field mustard | cytosol | 36.69 | 45.73 |
| CDY34181 | Canola | cytosol | 36.69 | 45.73 |
| CDY28496 | Canola | cytosol | 36.29 | 44.55 |
| AT5G40930.1 | Thale cress | cytosol | 33.06 | 43.85 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 34.68 | 42.79 |
| KRG94268 | Soybean | nucleus | 33.87 | 40.19 |
| PGSC0003DMT400052223 | Potato | cytosol | 33.06 | 40.0 |
| Solyc02g094140.2.1 | Tomato | cytosol | 32.66 | 39.71 |
| PGSC0003DMT400056939 | Potato | cytosol | 27.02 | 39.65 |
| Solyc02g068130.2.1 | Tomato | plastid | 32.26 | 39.22 |
| KRH57705 | Soybean | nucleus | 32.66 | 38.57 |
| PGSC0003DMT400056935 | Potato | cytosol | 28.23 | 36.46 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 28.63 | 35.15 |
| EES01977 | Sorghum | cytosol | 28.23 | 34.48 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 27.82 | 33.99 |
| Zm00001d012017_P002 | Maize | mitochondrion | 27.02 | 33.17 |
| TraesCS3B01G467700.1 | Wheat | golgi | 27.42 | 32.54 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 27.42 | 32.54 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 27.02 | 31.9 |
| AT1G27390.1 | Thale cress | cytosol | 26.61 | 31.43 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 9.27 | 30.26 |
| Zm00001d040209_P001 | Maize | cytosol | 16.94 | 25.77 |
| HORVU3Hr1G094550.2 | Barley | plastid | 16.13 | 17.86 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 8.06 | 12.2 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | EntrezGene:822325 | ProteinID:AEE77263.1 | ArrayExpress:AT3G27070 | EnsemblPlantsGene:AT3G27070 |
| RefSeq:AT3G27070 | TAIR:AT3G27070 | RefSeq:AT3G27070-TAIR-G | EnsemblPlants:AT3G27070.2 | TAIR:AT3G27070.2 | Unigene:At.6113 |
| UniProt:F4JEW8 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0005744 |
| GO:GO:0006626 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015450 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | GO:GO:0071806 | InterPro:IPR011990 | RefSeq:NP_001189984.1 |
| PFAM:PD102047 | PFAM:PF06552 | PO:PO:0000230 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 |
| PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | Symbol:TOM20-1 | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0001E92E00 | SEG:seg | : | : | : | : |
Description
TOM20-1Translocase outer membrane 20-1 [Source:UniProtKB/TrEMBL;Acc:F4JEW8]
Coordinates
chr3:-:9982987..9984744
Molecular Weight (calculated)
28809.8 Da
IEP (calculated)
8.341
GRAVY (calculated)
-0.012
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKLNFFEEI RKDAEETYKL NPEDADVSFY LRFLIFRYCF ASFSFVLCSI FRGMTLPWFD FCFCNQWREL KNFLALSLTL YVFFAEFDEM GRSFTRVISV
101: SKRYRFTEND SRYAISKLED AILIDPMKHD AVWCLGNAYT SYARLTPDDT QARLNFGLAY LFFGIAVAQQ PDNQVYHKSL EMADKAPQLH TGFHKNRLLS
201: LLGGVETLAI PSPKVVKNKK SSDEKYIVMG WVILAIGVVA CISFRKLR
101: SKRYRFTEND SRYAISKLED AILIDPMKHD AVWCLGNAYT SYARLTPDDT QARLNFGLAY LFFGIAVAQQ PDNQVYHKSL EMADKAPQLH TGFHKNRLLS
201: LLGGVETLAI PSPKVVKNKK SSDEKYIVMG WVILAIGVVA CISFRKLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.