Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34181 | Canola | cytosol | 95.05 | 96.48 |
| AT3G27080.1 | Thale cress | cytosol | 63.37 | 63.37 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 56.44 | 56.72 |
| KRG94268 | Soybean | nucleus | 57.43 | 55.5 |
| KRH57705 | Soybean | nucleus | 57.43 | 55.24 |
| PGSC0003DMT400052223 | Potato | cytosol | 55.94 | 55.12 |
| Solyc02g094140.2.1 | Tomato | cytosol | 55.45 | 54.9 |
| Solyc02g068130.2.1 | Tomato | plastid | 53.47 | 52.94 |
| CDX84923 | Canola | cytosol | 49.51 | 48.08 |
| CDY27615 | Canola | cytosol | 49.51 | 47.17 |
| Zm00001d012017_P002 | Maize | mitochondrion | 45.54 | 45.54 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 45.05 | 45.05 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 44.06 | 43.84 |
| EES01977 | Sorghum | cytosol | 44.06 | 43.84 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 16.34 | 43.42 |
| PGSC0003DMT400056939 | Potato | cytosol | 36.14 | 43.2 |
| CDY35747 | Canola | cytosol | 27.23 | 42.97 |
| PGSC0003DMT400056935 | Potato | cytosol | 40.59 | 42.71 |
| CDY03918 | Canola | cytosol | 43.56 | 42.31 |
| TraesCS3B01G467700.1 | Wheat | golgi | 43.07 | 41.63 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 42.57 | 41.15 |
| CDY15710 | Canola | cytosol | 43.07 | 41.04 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 42.57 | 40.95 |
| CDX90082 | Canola | cytosol | 41.58 | 40.38 |
| CDY11814 | Canola | cytosol | 40.59 | 39.42 |
| AT3G27070.2 | Thale cress | plasma membrane | 44.55 | 36.29 |
| Zm00001d040209_P001 | Maize | cytosol | 25.25 | 31.29 |
| HORVU3Hr1G094550.2 | Barley | plastid | 25.74 | 23.21 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 15.35 | 18.9 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:A0A078GSJ7 | UniProt:A0A078GSJ7 | EnsemblPlants:CDY28496 | ProteinID:CDY28496 |
| ProteinID:CDY28496.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | EnsemblPlantsGene:GSBRNA2T00040397001 |
| InterPro:IPR011990 | PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix |
| InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EED802 | SEG:seg | : | : |
Description
BnaC02g36640DBnaC02g36640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSJ7]
Coordinates
chrLK032221:+:155126..159455
Molecular Weight (calculated)
22259.3 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.239
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNDAEFDA IIMFEQIRKV SEATYLKNPL DADNLTRWAG ALLELAQFHN EDPKLTVQEA ISKLEEALLI DPKKNPAIWC LGNAYTTLAF LTPEETEAKY
101: NFDLAAHFFQ IAVDEQPENE TYQKSLEMTA KAPLLHAEVH RQGFGQHPNP SLGGAGPSGA SRSEVVKSSE LKYDVMGWVI LAVGVVAWVG YAKATAPISA
201: PR
101: NFDLAAHFFQ IAVDEQPENE TYQKSLEMTA KAPLLHAEVH RQGFGQHPNP SLGGAGPSGA SRSEVVKSSE LKYDVMGWVI LAVGVVAWVG YAKATAPISA
201: PR
001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
Arabidopsis Description
TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.