CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82614
CDX84923
CDX90082
CDY03366
CDY03918
CDY11814
CDY15710
CDY21581
CDY27615
CDY28496
CDY34181
CDY39135
CDY66507

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	CDX84923	AT1G27390.1	17981999
AT3G20000.1	CDX90082	AT1G27390.1	17981999
AT3G20000.1	CDY03918	AT1G27390.1	17981999
AT3G20000.1	CDY11814	AT1G27390.1	17981999
AT3G20000.1	CDY15710	AT1G27390.1	17981999
AT3G20000.1	CDY27615	AT1G27390.1	17981999
AT3G20000.1	CDX82614	AT2G19080.1	17981999
AT3G20000.1	CDY03366	AT2G19080.1	17981999
AT3G20000.1	CDY39135	AT2G19080.1	17981999
AT3G20000.1	CDY66507	AT2G19080.1	17981999
AT3G20000.1	CDY28496	AT3G27080.1	17981999
AT3G20000.1	CDY34181	AT3G27080.1	17981999
AT3G20000.1	CDY21581	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25368	Canola	cytosol	98.71	98.71
AT3G20000.1	Thale cress	cytosol	79.61	79.61
CDX82267	Canola	cytosol	79.29	79.29
CDY36066	Canola	cytosol	78.64	78.64
CDY33440	Canola	cytosol	77.99	77.74
CDY42223	Canola	cytosol	77.99	77.74
VIT_03s0097g00590.t01	Wine grape	cytosol	67.31	67.31
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	66.67	66.03
KRH60449	Soybean	mitochondrion	65.05	65.26
KRH41747	Soybean	mitochondrion	65.05	64.84
Solyc06g007710.2.1	Tomato	plastid	64.72	63.69
PGSC0003DMT400051986	Potato	cytosol, plastid	13.92	58.9
EER94935	Sorghum	cytosol, plastid	63.11	58.56
GSMUA_Achr8P01650_001	Banana	plastid	61.16	58.51
Zm00001d028971_P001	Maize	cytosol	63.11	58.38
Zm00001d047566_P008	Maize	cytosol	62.46	57.96
Os03t0323800-01	Rice	cytosol, mitochondrion	63.11	57.86
HORVU4Hr1G051720.1	Barley	cytosol	62.46	57.44
TraesCS4A01G129200.1	Wheat	plastid	62.46	57.44
TraesCS4B01G175300.1	Wheat	cytosol	62.14	57.14
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	62.14	57.14
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	61.49	56.89
CDY37141	Canola	cytosol	55.02	53.12
GSMUA_Achr10P...	Banana	extracellular, vacuole	32.04	52.66
CDY22793	Canola	cytosol	54.05	52.19
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	58.25	51.28
KXG32258	Sorghum	plastid	55.66	51.04
GSMUA_Achr10P...	Banana	plastid	34.95	50.47
TraesCS3A01G188600.1	Wheat	cytosol	54.37	50.15
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	54.05	50.0
Zm00001d008242_P001	Maize	mitochondrion	54.69	50.0
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	54.05	50.0
Zm00001d040440_P001	Maize	plastid	28.16	47.54
HORVU3Hr1G039040.6	Barley	mitochondrion	55.66	47.25
Os01t0276200-00	Rice	mitochondrion	50.16	37.44

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:A0A078GGU5	UniProt:A0A078GGU5	EnsemblPlants:CDY24571	ProteinID:CDY24571
ProteinID:CDY24571.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00026902001
InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
InterPro:Tom40	UniParc:UPI0004EE84DC	:	:	:	:

Description

BnaC05g32550DBnaC05g32550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGU5]

Coordinates

chrLK032161:-:103025..105937

Molecular Weight (calculated)

34315.2 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.243

Length

309 amino acids

Sequence
(BLAST)

001: MADLFPPLVT AQIDDKPKVD EKVDYSNLPC PVPYDELHRE AYMSLKTDNF EGFRFDFTKG LNQKFALCHS VMMGPMEVPS QSPDTTIKIP TAHYEFGANY
101: ADPKLMLVGR VMTDGRTSAR VRADLTDKLM MKANAQITNE PHMSSAMFHF DYMGSDYRAQ LQFGNSALIG ANYIQSVTPR LSLGGEVFWA GGPRKSGIGY
201: AARYETDKMV ASGQVASTGL VLMNYVQKVS DKVSLATDFM YNVFSREAVA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLIS AELDHKKKDY
301: KFGFGLTVG

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.