Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32258 | Sorghum | plastid | 92.31 | 92.58 |
| Zm00001d040440_P001 | Maize | plastid | 44.38 | 81.97 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 68.05 | 68.86 |
| GSMUA_Achr8P01650_001 | Banana | plastid | 64.79 | 67.8 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 61.83 | 67.64 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 36.98 | 66.49 |
| Zm00001d028971_P001 | Maize | cytosol | 65.38 | 66.17 |
| Zm00001d047566_P008 | Maize | cytosol | 65.09 | 66.07 |
| TraesCS3A01G188600.1 | Wheat | cytosol | 64.5 | 65.07 |
| TraesCS3D01G192000.1 | Wheat | cytosol, nucleus, peroxisome | 64.2 | 64.97 |
| KRH60449 | Soybean | mitochondrion | 59.17 | 64.94 |
| TraesCS3B01G217800.1 | Wheat | cytosol, nucleus, peroxisome | 63.61 | 64.37 |
| KRH41747 | Soybean | mitochondrion | 58.28 | 63.55 |
| Solyc06g007710.2.1 | Tomato | plastid | 58.88 | 63.38 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 57.4 | 62.18 |
| HORVU3Hr1G039040.6 | Barley | mitochondrion | 65.68 | 60.99 |
| CDX82267 | Canola | cytosol | 54.14 | 59.22 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 61.24 | 58.97 |
| AT3G20000.1 | Thale cress | cytosol | 53.85 | 58.9 |
| CDY36066 | Canola | cytosol | 53.55 | 58.58 |
| CDY33440 | Canola | cytosol | 53.25 | 58.06 |
| CDY42223 | Canola | cytosol | 52.96 | 57.74 |
| Bra038249.1-P | Field mustard | cytosol | 52.66 | 57.42 |
| AT1G50400.1 | Thale cress | cytosol | 52.07 | 56.77 |
| GSMUA_Achr10P... | Banana | plastid | 34.91 | 55.14 |
| PGSC0003DMT400051986 | Potato | cytosol, plastid | 11.83 | 54.79 |
| CDY24571 | Canola | cytosol | 50.0 | 54.69 |
| Bra035826.1-P | Field mustard | cytosol | 49.11 | 53.72 |
| CDY25368 | Canola | cytosol | 48.82 | 53.4 |
| Os01t0276200-00 | Rice | mitochondrion | 63.31 | 51.69 |
| CDY37141 | Canola | cytosol | 45.86 | 48.44 |
| Bra018846.1-P | Field mustard | cytosol | 44.97 | 47.5 |
| CDY22793 | Canola | cytosol | 44.67 | 47.19 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:23.2.1.6 | ProteinID:AQK89289.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008320 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030150 |
| GO:GO:0055085 | InterPro:IPR023614 | UniProt:K7VNQ7 | PFAM:PF01459 | PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 |
| InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | InterPro:Tom40 | UniParc:UPI000220A784 | EnsemblPlantsGene:Zm00001d008242 | EnsemblPlants:Zm00001d008242_P001 |
| EnsemblPlants:Zm00001d008242_T001 | SEG:seg | : | : | : | : |
Description
Mitochondrial import receptor subunit TOM40-1
Coordinates
chr8:+:2424564..2438283
Molecular Weight (calculated)
37347.4 Da
IEP (calculated)
6.407
GRAVY (calculated)
-0.350
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSVSQAGA PPPHPPTYAS TPPFAPAAAD AADAAAAPPP KPHEEEATEE KVDYLNLPCP VPYEEIQREA FMALKPDLFE GMRFDLTKMI TPYFALTHSV
101: AMGSIEIPAQ GSEVIKVPTS NYEFGANFIN QRTMLMGRVS HEGRENIRVK HDITDNLSLK INAQLTSEPH YSQGMLNFDY KGKDFRSQVQ FGNNGFYGAN
201: YIQSVSKNLS LGTEAFWLGQ QRKSGVGVVA RYDTKKMVAT AQIATTGMVA LSYVQKVSEK VSLASDFMYN QMTKDVTASF GYDYMLRQCR LRGKLDTNGV
301: ISSLLEERLT PGVTFQLSAE LDHWKKDYKF GFGMALGE
101: AMGSIEIPAQ GSEVIKVPTS NYEFGANFIN QRTMLMGRVS HEGRENIRVK HDITDNLSLK INAQLTSEPH YSQGMLNFDY KGKDFRSQVQ FGNNGFYGAN
201: YIQSVSKNLS LGTEAFWLGQ QRKSGVGVVA RYDTKKMVAT AQIATTGMVA LSYVQKVSEK VSLASDFMYN QMTKDVTASF GYDYMLRQCR LRGKLDTNGV
301: ISSLLEERLT PGVTFQLSAE LDHWKKDYKF GFGMALGE
001: MEGFSPPINT AQVDAKTKLD EKVDYSNLPC PVLYEELNRE ATMALKPELF EGFRLDYNKS LNQKFFLSHS ILMGPTEVPN PTPSSEIIKI PTANYDFGAG
101: FIDPKLYLIG RITTDGRLNA RAKFDLTDNF SVKANALLTD EEDKSQGHLV IDYKGSDYRT QLQLGNNSVY AANYIQHVTP HLSLGGEAFW LGQQLMSGVG
201: YAARYETDKT VASGQIASTG VAVMNYVHKV SEKLSFATDF IYNYLSRDVT ASVGYDLITR QSRLRGKVDS NGVVAAYLEE QLPIGLRFLL SAEVDHVKKD
301: YKFGFGVNAF
101: FIDPKLYLIG RITTDGRLNA RAKFDLTDNF SVKANALLTD EEDKSQGHLV IDYKGSDYRT QLQLGNNSVY AANYIQHVTP HLSLGGEAFW LGQQLMSGVG
201: YAARYETDKT VASGQIASTG VAVMNYVHKV SEKLSFATDF IYNYLSRDVT ASVGYDLITR QSRLRGKVDS NGVVAAYLEE QLPIGLRFLL SAEVDHVKKD
301: YKFGFGVNAF
Arabidopsis Description
TOM40-2Probable mitochondrial import receptor subunit TOM40-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.