Factsheet for GSMUA_Achr2P11550_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P15670_001
GSMUA_Achr8P00730_001
GSMUA_Achr9P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	GSMUA_Achr8P00730_001	AT1G27390.1	17981999
AT3G20000.1	GSMUA_Achr1P15670_001	AT2G19080.1	17981999
AT3G20000.1	GSMUA_Achr8P00730_001	AT3G27080.1	17981999
AT3G20000.1	GSMUA_Achr9P14860_001	AT5G09420.1	17981999
AT3G20000.1	GSMUA_Achr8P00730_001	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01650_001	Banana	plastid	77.21	83.9
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	73.5	77.25
GSMUA_Achr10P...	Banana	extracellular, vacuole	40.74	76.06
Os03t0323800-01	Rice	cytosol, mitochondrion	70.94	73.89
EER94935	Sorghum	cytosol, plastid	68.38	72.07
Zm00001d028971_P001	Maize	cytosol	68.09	71.56
Zm00001d047566_P008	Maize	cytosol	67.81	71.47
HORVU4Hr1G051720.1	Barley	cytosol	68.38	71.43
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	68.38	71.43
VIT_03s0097g00590.t01	Wine grape	cytosol	62.68	71.2
TraesCS4B01G175300.1	Wheat	cytosol	68.09	71.13
TraesCS4A01G129200.1	Wheat	plastid	68.09	71.13
KRH41747	Soybean	mitochondrion	60.68	68.71
KRH60449	Soybean	mitochondrion	60.11	68.51
Solyc06g007710.2.1	Tomato	plastid	61.25	68.47
GSMUA_Achr10P...	Banana	plastid	41.6	68.22
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	59.26	66.67
CDY33440	Canola	cytosol	56.7	64.19
CDY42223	Canola	cytosol	56.41	63.87
Bra038249.1-P	Field mustard	cytosol	56.13	63.55
CDX82267	Canola	cytosol	55.56	63.11
CDY36066	Canola	cytosol	54.99	62.46
AT3G20000.1	Thale cress	cytosol	54.42	61.81
Zm00001d008242_P001	Maize	mitochondrion	58.97	61.24
KXG32258	Sorghum	plastid	58.69	61.13
CDY24571	Canola	cytosol	51.28	58.25
Bra035826.1-P	Field mustard	cytosol	51.28	58.25
CDY25368	Canola	cytosol	51.0	57.93
TraesCS3A01G188600.1	Wheat	cytosol	55.27	57.91
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	54.42	57.19
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	53.85	56.59
AT1G50400.1	Thale cress	cytosol	49.29	55.81
HORVU3Hr1G039040.6	Barley	mitochondrion	55.84	53.85
Zm00001d040440_P001	Maize	plastid	27.07	51.91
CDY37141	Canola	cytosol	43.87	48.12
Bra018846.1-P	Field mustard	cytosol	43.02	47.19
CDY22793	Canola	cytosol	42.73	46.88
Os01t0276200-00	Rice	mitochondrion	54.7	46.38

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085
EnsemblPlantsGene:GSMUA_Achr2G11550_001	EnsemblPlants:GSMUA_Achr2P11550_001	EnsemblPlants:GSMUA_Achr2T11550_001	InterPro:IPR023614	UniProt:M0S746	PFAM:PF01459
PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI000296215C
SEG:seg	:	:	:	:	:

Description

Mitochondrial import receptor subunit TOM40 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G11550_001]

Coordinates

chr2:-:14359101..14364696

Molecular Weight (calculated)

39449.4 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.114

Length

351 amino acids

Sequence
(BLAST)

001: MGSSASHVAA PPPLAPPAVG LAVALPPKQD ERTEPQKVDW LNLPCPIPLI SEYICPMFST VSLKPELFEG LRFDFTKGIN QKFSLSHSVF MGSMEMEVPS
101: QSSDTIKVPT AHYEFGANFL DPKLILVGRV MTDGRLNARV KCDLIDNLTL KINAQLTNEP HFSQGMFSFD YKGKDFRTQF QIGNNAFYGA NCIQSVSPYL
201: SLGGEIFWLG HQRKSVIGFT ARYNTDNMIA TGQVASTGIV ALSYVQKVFE KVSLASDFMY NRLTQDVTSS FGYDYILRQN IYHYTLWGKL DSNGVIAAFL
301: EERLNMGVNF ILSAEVSRAL ITKRKDYKFG FGMTVGERSF SCNFFRRWNN W

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.