Factsheet for Zm00001d040440_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012017_P002
Zm00001d018098_P005
Zm00001d040209_P001
Zm00001d042329_P001
Zm00001d045193_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	Zm00001d012017_P002	AT1G27390.1	17981999
AT3G20000.1	Zm00001d040209_P001	AT1G27390.1	17981999
AT3G20000.1	Zm00001d042329_P001	AT1G27390.1	17981999
AT3G20000.1	Zm00001d045193_P002	AT2G19080.1	17981999
AT3G20000.1	Zm00001d012017_P002	AT3G27080.1	17981999
AT3G20000.1	Zm00001d040209_P001	AT3G27080.1	17981999
AT3G20000.1	Zm00001d042329_P001	AT3G27080.1	17981999
AT3G20000.1	Zm00001d018098_P005	AT5G09420.1	17981999
AT3G20000.1	Zm00001d012017_P002	AT5G40930.1	17981999
AT3G20000.1	Zm00001d040209_P001	AT5G40930.1	17981999
AT3G20000.1	Zm00001d042329_P001	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051986	Potato	cytosol, plastid	21.86	54.79
GSMUA_Achr10P...	Banana	plastid	55.74	47.66
KXG32258	Sorghum	plastid	81.97	44.51
Zm00001d008242_P001	Maize	mitochondrion	81.97	44.38
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	59.56	32.63
VIT_03s0097g00590.t01	Wine grape	cytosol	54.1	32.04
GSMUA_Achr8P01650_001	Banana	plastid	56.28	31.89
Zm00001d028971_P001	Maize	cytosol	57.92	31.74
Zm00001d047566_P008	Maize	cytosol	57.38	31.53
Solyc06g007710.2.1	Tomato	plastid	51.37	29.94
KRH60449	Soybean	mitochondrion	50.27	29.87
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	49.73	29.17
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	53.01	29.04
TraesCS3A01G188600.1	Wheat	cytosol	53.01	28.96
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	51.91	28.44
CDY33440	Canola	cytosol	48.09	28.39
KRH41747	Soybean	mitochondrion	48.09	28.39
CDY36066	Canola	cytosol	47.54	28.16
CDY24571	Canola	cytosol	47.54	28.16
CDX82267	Canola	cytosol	47.54	28.16
CDY42223	Canola	cytosol	47.54	28.06
Bra038249.1-P	Field mustard	cytosol	47.54	28.06
HORVU3Hr1G039040.6	Barley	mitochondrion	55.19	27.75
AT3G20000.1	Thale cress	cytosol	46.45	27.51
CDY25368	Canola	cytosol	46.45	27.51
Bra035826.1-P	Field mustard	cytosol	46.45	27.51
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	51.91	27.07
AT1G50400.1	Thale cress	cytosol	43.72	25.81
CDY37141	Canola	cytosol	39.34	22.5
Bra018846.1-P	Field mustard	cytosol	38.8	22.19
CDY22793	Canola	cytosol	38.25	21.88
Os01t0276200-00	Rice	mitochondrion	39.89	17.63
GSMUA_Achr10P...	Banana	extracellular, vacuole	5.46	5.32

Protein Annotations

EntrezGene:103650021	MapMan:23.2.1.6	UniProt:A0A1D6MQU1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150
GO:GO:0055085	ProteinID:ONM31373.1	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40
InterPro:Tom40	UniParc:UPI0002217E34	EnsemblPlantsGene:Zm00001d040440	EnsemblPlants:Zm00001d040440_P001	EnsemblPlants:Zm00001d040440_T001	SEG:seg

Description

Mitochondrial import receptor subunit TOM40-1

Coordinates

chr3:-:43522797..43523973

Molecular Weight (calculated)

20301.3 Da

IEP (calculated)

5.925

GRAVY (calculated)

-0.309

Length

183 amino acids

Sequence
(BLAST)

001: MGSSVSQASA PPPPPPTYAS TPPSFVHAAA DVAAPPPKPH EEEATEEKVD YLNLPCPVPY EEIQREAFMT LKPDLFEGMR FDFTKMITPY FALTHSVAMG
101: SIDIPAQKSG VIKIPTSNYE FGANFINQKT MLMGRVAHDG RENIRVKHDI TDNLSLKINA QLTSEPHYSK GMLYFDYKVS LLL

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.