Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82267 | Canola | cytosol | 84.47 | 84.47 |
| CDY36066 | Canola | cytosol | 84.47 | 84.47 |
| CDY42223 | Canola | cytosol | 84.14 | 83.87 |
| Bra038249.1-P | Field mustard | cytosol | 83.82 | 83.55 |
| CDY33440 | Canola | cytosol | 83.82 | 83.55 |
| CDY24571 | Canola | cytosol | 79.61 | 79.61 |
| Bra035826.1-P | Field mustard | cytosol | 78.64 | 78.64 |
| CDY25368 | Canola | cytosol | 78.32 | 78.32 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 73.46 | 73.46 |
| KRH60449 | Soybean | mitochondrion | 72.82 | 73.05 |
| KRH41747 | Soybean | mitochondrion | 72.17 | 71.94 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 72.49 | 71.79 |
| Solyc06g007710.2.1 | Tomato | plastid | 72.49 | 71.34 |
| AT1G50400.1 | Thale cress | cytosol | 66.99 | 66.77 |
| EER94935 | Sorghum | cytosol, plastid | 70.23 | 65.17 |
| Zm00001d028971_P001 | Maize | cytosol | 70.23 | 64.97 |
| PGSC0003DMT400051986 | Potato | cytosol, plastid | 15.21 | 64.38 |
| Zm00001d047566_P008 | Maize | cytosol | 69.26 | 64.26 |
| GSMUA_Achr8P01650_001 | Banana | plastid | 66.02 | 63.16 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 68.61 | 62.91 |
| TraesCS4A01G129200.1 | Wheat | plastid | 67.64 | 62.2 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 67.31 | 61.9 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 67.31 | 61.9 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 66.99 | 61.61 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 66.02 | 61.08 |
| GSMUA_Achr10P... | Banana | extracellular, vacuole | 36.89 | 60.64 |
| KXG32258 | Sorghum | plastid | 60.19 | 55.19 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 61.81 | 54.42 |
| Zm00001d008242_P001 | Maize | mitochondrion | 58.9 | 53.85 |
| TraesCS3A01G188600.1 | Wheat | cytosol | 58.25 | 53.73 |
| TraesCS3D01G192000.1 | Wheat | cytosol, nucleus, peroxisome | 57.93 | 53.59 |
| TraesCS3B01G217800.1 | Wheat | cytosol, nucleus, peroxisome | 57.61 | 53.29 |
| GSMUA_Achr10P... | Banana | plastid | 35.28 | 50.93 |
| HORVU3Hr1G039040.6 | Barley | mitochondrion | 57.28 | 48.63 |
| Zm00001d040440_P001 | Maize | plastid | 27.51 | 46.45 |
| Os01t0276200-00 | Rice | mitochondrion | 55.02 | 41.06 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:23.2.1.6 | EntrezGene:821538 | UniProt:A0A178V9B1 | ProteinID:AEE76317.1 | ArrayExpress:AT3G20000 |
| EnsemblPlantsGene:AT3G20000 | RefSeq:AT3G20000 | TAIR:AT3G20000 | RefSeq:AT3G20000-TAIR-G | EnsemblPlants:AT3G20000.1 | TAIR:AT3G20000.1 |
| EMBL:AY050925 | EMBL:AY117216 | ProteinID:BAB03165.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005741 | GO:GO:0005743 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006626 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0008150 | GO:GO:0008320 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0015266 |
| GO:GO:0015288 | GO:GO:0015450 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030150 |
| GO:GO:0046930 | GO:GO:0055085 | InterPro:IPR023614 | RefSeq:NP_188634.1 | ProteinID:OAP02769.1 | PFAM:PF01459 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 |
| InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniProt:Q9LHE5 | Symbol:TOM40 | InterPro:Tom40 | UniParc:UPI00000017D8 |
Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
Coordinates
chr3:+:6967462..6970652
Molecular Weight (calculated)
34252.0 Da
IEP (calculated)
6.810
GRAVY (calculated)
-0.213
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.