Factsheet for Solyc06g007710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068130.2.1
Solyc02g094140.2.1
Solyc07g009320.2.1
Solyc10g047300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	Solyc02g068130.2.1	AT1G27390.1	17981999
AT3G20000.1	Solyc02g094140.2.1	AT1G27390.1	17981999
AT3G20000.1	Solyc07g009320.2.1	AT2G19080.1	17981999
AT3G20000.1	Solyc02g068130.2.1	AT3G27080.1	17981999
AT3G20000.1	Solyc02g094140.2.1	AT3G27080.1	17981999
AT3G20000.1	Solyc10g047300.1.1	AT5G09420.1	17981999
AT3G20000.1	Solyc02g068130.2.1	AT5G40930.1	17981999
AT3G20000.1	Solyc02g094140.2.1	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	87.58	88.14
VIT_03s0097g00590.t01	Wine grape	cytosol	83.44	84.79
KRH60449	Soybean	mitochondrion	80.57	82.14
KRH41747	Soybean	mitochondrion	80.89	81.94
CDY33440	Canola	cytosol	73.89	74.84
CDY42223	Canola	cytosol	73.57	74.52
Bra038249.1-P	Field mustard	cytosol	73.25	74.19
PGSC0003DMT400051986	Potato	cytosol, plastid	17.2	73.97
CDY36066	Canola	cytosol	72.29	73.46
CDX82267	Canola	cytosol	71.97	73.14
AT3G20000.1	Thale cress	cytosol	71.34	72.49
GSMUA_Achr8P01650_001	Banana	plastid	73.89	71.83
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	74.52	70.06
EER94935	Sorghum	cytosol, plastid	74.2	69.97
Zm00001d028971_P001	Maize	cytosol	73.57	69.16
GSMUA_Achr10P...	Banana	extracellular, vacuole	41.4	69.15
Zm00001d047566_P008	Maize	cytosol	72.93	68.77
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	72.61	67.86
TraesCS4B01G175300.1	Wheat	cytosol	72.61	67.86
TraesCS4A01G129200.1	Wheat	plastid	72.61	67.86
Os03t0323800-01	Rice	cytosol, mitochondrion	72.61	67.66
HORVU4Hr1G051720.1	Barley	cytosol	72.29	67.56
CDY24571	Canola	cytosol	63.69	64.72
CDY25368	Canola	cytosol	63.38	64.4
Bra035826.1-P	Field mustard	cytosol	63.38	64.4
AT1G50400.1	Thale cress	cytosol	61.15	61.94
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	68.47	61.25
KXG32258	Sorghum	plastid	64.01	59.64
Zm00001d008242_P001	Maize	mitochondrion	63.38	58.88
GSMUA_Achr10P...	Banana	plastid	39.17	57.48
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	59.24	55.69
TraesCS3A01G188600.1	Wheat	cytosol	59.24	55.52
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	58.6	55.09
CDY37141	Canola	cytosol	55.41	54.38
CDY22793	Canola	cytosol	54.14	53.12
Bra018846.1-P	Field mustard	cytosol	54.14	53.12
HORVU3Hr1G039040.6	Barley	mitochondrion	60.19	51.92
Zm00001d040440_P001	Maize	plastid	29.94	51.37
Os01t0276200-00	Rice	mitochondrion	59.24	44.93

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005742	GO:GO:0006810
GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0015266	GO:GO:0016020	GO:GO:0016043
GO:GO:0030150	GO:GO:0055085	InterPro:IPR023614	UniProt:K4C3F2	PFAM:PF01459	PANTHER:PTHR10802
PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	EnsemblPlantsGene:Solyc06g007710.2	EnsemblPlants:Solyc06g007710.2.1	InterPro:Tom40
UniParc:UPI0002766323	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:1692886..1704358

Molecular Weight (calculated)

34613.5 Da

IEP (calculated)

7.232

GRAVY (calculated)

-0.197

Length

314 amino acids

Sequence
(BLAST)

001: MATLIPPSVI VPPANSKSAA VESEKEKVDY LNLPCPIPYE EIHREALMSL KPELFEGLRF DFTGGLNQRF SLSHSVFMGP TELPTQSADI VKIPTAHYEF
101: GANFIDPQMM LIGRVMTDGR VNARVKCDLS ENLSLKANGQ LTGEPHMSHG MVNFDYKGKD YRTQFQLGNG ALLGASYIQS VGPHLSLGGE VFWAGQHRKS
201: GIGYAARYNT DKMVAAGQVA STGMVALSYV QKISDKVSLA SDFMYNYMSR DVTASFGYDY ILRQCRLRGK VDSNGCAAAF LEERLNMGLN FILSAEVDHK
301: KKDYKFGFGL TVGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.