CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01977
KXG30729
OQU75905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	EES01977	AT1G27390.1	17981999
AT3G20000.1	OQU75905	AT2G19080.1	17981999
AT3G20000.1	EES01977	AT3G27080.1	17981999
AT3G20000.1	KXG30729	AT5G09420.1	17981999
AT3G20000.1	EES01977	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028971_P001	Maize	cytosol	95.2	94.91
Zm00001d047566_P008	Maize	cytosol	93.09	93.09
Os03t0323800-01	Rice	cytosol, mitochondrion	89.49	88.43
HORVU4Hr1G051720.1	Barley	cytosol	86.79	86.01
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	86.49	85.71
TraesCS4B01G175300.1	Wheat	cytosol	86.19	85.42
TraesCS4A01G129200.1	Wheat	plastid	86.19	85.42
GSMUA_Achr8P01650_001	Banana	plastid	78.68	81.11
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	79.88	79.64
VIT_03s0097g00590.t01	Wine grape	cytosol	71.77	77.35
Solyc06g007710.2.1	Tomato	plastid	69.97	74.2
GSMUA_Achr10P...	Banana	extracellular, vacuole	41.44	73.4
KRH41747	Soybean	mitochondrion	67.87	72.9
KRH60449	Soybean	mitochondrion	67.27	72.73
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	67.87	72.44
AT3G20000.1	Thale cress	cytosol	65.17	70.23
CDY33440	Canola	cytosol	64.86	69.68
CDY42223	Canola	cytosol	64.56	69.35
Bra038249.1-P	Field mustard	cytosol	64.56	69.35
CDY36066	Canola	cytosol	63.66	68.61
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	72.07	68.38
CDX82267	Canola	cytosol	63.36	68.28
KXG32258	Sorghum	plastid	67.87	67.06
GSMUA_Achr10P...	Banana	plastid	42.94	66.82
PGSC0003DMT400051986	Potato	cytosol, plastid	14.11	64.38
CDY24571	Canola	cytosol	58.56	63.11
Bra035826.1-P	Field mustard	cytosol	58.26	62.78
CDY25368	Canola	cytosol	57.96	62.46
AT1G50400.1	Thale cress	cytosol	57.36	61.61
CDY37141	Canola	cytosol	50.45	52.5
Bra018846.1-P	Field mustard	cytosol	49.55	51.56
CDY22793	Canola	cytosol	49.25	51.25

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	EntrezGene:8055901	UniProt:C5X1R7	EnsemblPlants:EER94935	ProteinID:EER94935
ProteinID:EER94935.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150
GO:GO:0008320	GO:GO:0009987	GO:GO:0015266	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150
GO:GO:0055085	InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	EnsemblPlantsGene:SORBI_3001G387800	unigene:Sbi.5961	InterPro:Tom40	UniParc:UPI0001A82E66	RefSeq:XP_002467937.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:67500473..67506845

Molecular Weight (calculated)

36865.2 Da

IEP (calculated)

7.111

GRAVY (calculated)

-0.256

Length

333 amino acids

Sequence
(BLAST)

001: MGSVASAAVP PPPQSAPPQV GAPPYGPGLA GILPPRPEGE EKKEEKVDYL NLPCPVPFEE IQREALMSLK PELFEGLRFD FTKGLNQKFS LSHSVFMGSL
101: EVPAQAAETI KVPTAHYEFG ANFLDPKLML IGRVMTDGRL NARVKCDLTD NLTLKVNAQL TQEAHYSQGM FNFDYKGSDY RAQFQIGNNA FYGANYIQSV
201: TPNLSMGTEM FWLGHQRKSG IGFASRYNTD KMVGTLQVAS TGIVALSYVQ KISEKVSLAS DFMYNHMSRD VTASFGYDYL LRQCRLRGKI DSNGVVAAYL
301: EERLNMGVNF LLSAEIDHCK KNYKFGFGMT VGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.