CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94268
KRG97423
KRH02821
KRH10544
KRH12285
KRH19062
KRH31475
KRH37302
KRH43896
KRH57705
KRH58262
KRH58264

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	KRG97423	AT1G27390.1	17981999
AT3G20000.1	KRH31475	AT1G27390.1	17981999
AT3G20000.1	KRH02821	AT2G19080.1	17981999
AT3G20000.1	KRH12285	AT2G19080.1	17981999
AT3G20000.1	KRH19062	AT2G19080.1	17981999
AT3G20000.1	KRH37302	AT2G19080.1	17981999
AT3G20000.1	KRG94268	AT3G27080.1	17981999
AT3G20000.1	KRH57705	AT3G27080.1	17981999
AT3G20000.1	KRH10544	AT5G09420.1	17981999
AT3G20000.1	KRH43896	AT5G09420.1	17981999
AT3G20000.1	KRH58262	AT5G09420.1	17981999
AT3G20000.1	KRH58264	AT5G09420.1	17981999
AT3G20000.1	KRG94268	AT5G40930.1	17981999
AT3G20000.1	KRH57705	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41747	Soybean	mitochondrion	97.4	96.77
VIT_03s0097g00590.t01	Wine grape	cytosol	86.04	85.76
Solyc06g007710.2.1	Tomato	plastid	82.14	80.57
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	80.84	79.81
CDX82267	Canola	cytosol	73.38	73.14
AT3G20000.1	Thale cress	cytosol	73.05	72.82
CDY36066	Canola	cytosol	72.73	72.49
CDY33440	Canola	cytosol	72.4	71.94
CDY42223	Canola	cytosol	72.08	71.61
Bra038249.1-P	Field mustard	cytosol	71.75	71.29
GSMUA_Achr8P01650_001	Banana	plastid	74.35	70.9
GSMUA_Achr10P...	Banana	extracellular, vacuole	41.88	68.62
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	74.03	68.26
EER94935	Sorghum	cytosol, plastid	72.73	67.27
Zm00001d028971_P001	Maize	cytosol	72.73	67.07
Os03t0323800-01	Rice	cytosol, mitochondrion	73.38	67.06
Zm00001d047566_P008	Maize	cytosol	71.43	66.07
TraesCS4B01G175300.1	Wheat	cytosol	71.75	65.77
HORVU4Hr1G051720.1	Barley	cytosol	71.43	65.48
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	71.1	65.18
TraesCS4A01G129200.1	Wheat	plastid	71.1	65.18
CDY24571	Canola	cytosol	65.26	65.05
Bra035826.1-P	Field mustard	cytosol	64.29	64.08
CDY25368	Canola	cytosol	64.29	64.08
PGSC0003DMT400051986	Potato	cytosol, plastid	14.94	63.01
AT1G50400.1	Thale cress	cytosol	63.31	62.9
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	68.51	60.11
KXG32258	Sorghum	plastid	65.26	59.64
Zm00001d008242_P001	Maize	mitochondrion	64.94	59.17
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	61.69	56.89
TraesCS3A01G188600.1	Wheat	cytosol	61.69	56.72
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	61.04	56.29
GSMUA_Achr10P...	Banana	plastid	38.64	55.61
HORVU3Hr1G039040.6	Barley	mitochondrion	62.01	52.47
CDY37141	Canola	cytosol	53.9	51.88
Bra018846.1-P	Field mustard	cytosol	53.57	51.56
CDY22793	Canola	cytosol	53.25	51.25
Zm00001d040440_P001	Maize	plastid	29.87	50.27
Os01t0276200-00	Rice	mitochondrion	58.44	43.48

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	EMBL:ACUP02003364	ProteinID:BAH79623.1	UniProt:C5NTE7	EnsemblPlantsGene:GLYMA_05G241100
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005741	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320
GO:GO:0009987	GO:GO:0015266	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085
InterPro:IPR023614	EnsemblPlants:KRH60449	ProteinID:KRH60449	ProteinID:KRH60449.1	PFAM:PF01459	PANTHER:PTHR10802
PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI0001A8B73D	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:41608543..41614319

Molecular Weight (calculated)

34272.1 Da

IEP (calculated)

7.926

GRAVY (calculated)

-0.214

Length

308 amino acids

Sequence
(BLAST)

001: MATPIPPPPA AAAAAAADTK VDYLNLPCPI PFEELHREAM MSLKPDLFEG MRFDFTKMLN QKFSLNHSVL MGPTEVPSQS TETIKIPTAH YEFGSTFIDH
101: PRLLLWGRIL TDGRLNARVK CDLSENLTFK ANAQLTNEPH MSHAMINFDY KGKDYRTQFQ LGNGALLGAS YIQSVTQHLS LGGEVFWAGQ HRKSGIGYAA
201: RYNTDKSVAT GQVASTGMVL LSYVQKVSEK VSLASEFMCN YLSRDVTASF GYDYILRQCR LRGKIDSNGC VAAFLEERLN MGLNFILSAE LDHRKKDYKF
301: GFGLTVGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.