CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01878
KRH03461
KRH41747
KRH51281
KRH56921
KRH60449
KRH75237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	KRH01878	AT2G02560.1	21798944
AT2G19080.1	KRH51281	AT2G02560.1	21798944
AT2G19080.1	KRH75237	AT2G02560.1	21798944
AT2G19080.1	KRH41747	AT3G20000.1	17981999
AT2G19080.1	KRH60449	AT3G20000.1	17981999
AT2G19080.1	KRH03461	AT3G47640.1	21798944
AT2G19080.1	KRH56921	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12285	Soybean	cytosol	90.88	91.16
KRH02821	Soybean	mitochondrion	69.3	71.03
KRH19062	Soybean	cytosol, nucleus, plasma membrane	68.69	70.62
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	56.84	57.36
PGSC0003DMT400021961	Potato	cytosol	56.53	57.06
VIT_11s0103g00300.t01	Wine grape	cytosol	55.62	56.13
CDX82614	Canola	cytosol	49.85	52.23
Bra038562.1-P	Field mustard	cytosol	48.94	51.27
CDY39135	Canola	cytosol	48.94	51.11
CDY66507	Canola	cytosol	48.63	50.96
CDY03366	Canola	cytosol, golgi, peroxisome	48.63	50.96
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	48.33	50.48
Bra038838.1-P	Field mustard	cytosol	34.65	49.35
GSMUA_Achr1P15670_001	Banana	cytosol	44.98	49.17
TraesCS7B01G030900.1	Wheat	plastid	48.02	46.88
OQU75905	Sorghum	cytosol, plastid	47.72	46.59
TraesCS7A01G130600.1	Wheat	plastid	47.42	46.29
Os06t0168000-01	Rice	cytosol, peroxisome	47.11	44.8
TraesCS7D01G130000.1	Wheat	plastid	47.11	44.67
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	41.64	43.22
Zm00001d045193_P002	Maize	mitochondrion	46.5	41.46

Protein Annotations

EMBL:ACUP02005437	EMBL:BT093887	EnsemblPlants:KRH37302	EnsemblPlantsGene:GLYMA_09G057900	EntrezGene:100811573	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Metaxin_GST	InterPro:Thioredoxin-like_fold	PANTHER:PTHR12289
PANTHER:PTHR12289:SF41	PFAM:PF17171	PFAM:PF17172	ProteinID:KRH37302	ProteinID:KRH37302.1	SEG:seg
SUPFAM:SSF47616	TMHMM:TMhelix	UniParc:UPI0001B162F6	UniProt:C6T8T4	MapMan:23.2.2.2	:

Description

hypothetical protein

Coordinates

chr9:+:5261727..5272890

Molecular Weight (calculated)

37071.5 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.404

Length

329 amino acids

Sequence
(BLAST)

001: MATEPSESTQ RNTLVVRKPC FGLPTGCPQC LSAYIFLKLS QVPFNLDYHP NYPDSDQIPY FEDGDSVTYN NEKEGIIECL KRNVGGDLDS EVSSLPDWIP
101: TKVMATTWLA DALEYELWVG CDGSSAYSIY YSDLPWPIGK VLFWKKAYWV KQKHGISEEN VEVKEEEIYG RANSAYDALS TWLGEQNYLF ENRPSSLDAI
201: FLAHALVVLQ ALPESSILRT NFLEHANLVR YVQRCKTELI VAGTSASNDP YFHADPSSSA SRGRSTSSSK PKTKPKRQPP TKEEKTLRRR AKYFVVAQLV
301: AVVLFVSVLS GYRNNAADME LDNDDLGYE

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.