CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77869
CDX82267
CDX83022
CDX86900
CDY03047
CDY09359
CDY17794
CDY21793
CDY24571
CDY25368
CDY33440
CDY36066
CDY41685
CDY42223
CDY45206
CDY53423

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	CDY03047	AT2G02560.1	21798944
AT2G19080.1	CDY09359	AT2G02560.1	21798944
AT2G19080.1	CDY41685	AT2G02560.1	21798944
AT2G19080.1	CDY45206	AT2G02560.1	21798944
AT2G19080.1	CDX82267	AT3G20000.1	17981999
AT2G19080.1	CDY24571	AT3G20000.1	17981999
AT2G19080.1	CDY25368	AT3G20000.1	17981999
AT2G19080.1	CDY33440	AT3G20000.1	17981999
AT2G19080.1	CDY36066	AT3G20000.1	17981999
AT2G19080.1	CDY42223	AT3G20000.1	17981999
AT2G19080.1	CDX77869	AT3G47640.1	21798944
AT2G19080.1	CDX83022	AT3G47640.1	21798944
AT2G19080.1	CDX86900	AT3G47640.1	21798944
AT2G19080.1	CDY17794	AT3G47640.1	21798944
AT2G19080.1	CDY21793	AT3G47640.1	21798944
AT2G19080.1	CDY53423	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038562.1-P	Field mustard	cytosol	99.04	99.04
CDY03366	Canola	cytosol, golgi, peroxisome	97.45	97.45
CDX82614	Canola	cytosol	86.62	86.62
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	85.99	85.71
CDY39135	Canola	cytosol	83.44	83.17
VIT_11s0103g00300.t01	Wine grape	cytosol	58.28	56.13
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	57.32	55.21
PGSC0003DMT400021961	Potato	cytosol	57.32	55.21
KRH19062	Soybean	cytosol, nucleus, plasma membrane	51.91	50.94
KRH02821	Soybean	mitochondrion	51.27	50.16
KRH12285	Soybean	cytosol	51.27	49.09
KRH37302	Soybean	cytosol	50.96	48.63
OQU75905	Sorghum	cytosol, plastid	48.41	45.1
TraesCS7B01G030900.1	Wheat	plastid	48.41	45.1
TraesCS7A01G130600.1	Wheat	plastid	47.77	44.51
TraesCS7D01G130000.1	Wheat	plastid	47.45	42.94
GSMUA_Achr1P15670_001	Banana	cytosol	41.08	42.86
Os06t0168000-01	Rice	cytosol, peroxisome	46.5	42.2
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	41.08	40.69
Zm00001d045193_P002	Maize	mitochondrion	47.77	40.65

Protein Annotations

MapMan:23.2.2.2	GO:A0A078JM94	UniProt:A0A078JM94	EnsemblPlants:CDY66507	ProteinID:CDY66507	ProteinID:CDY66507.1
GO:GO:0001401	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006626	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00054458001	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Metaxin	InterPro:Metaxin_GST
PFAM:PF17171	PFAM:PF17172	PIRSF:PIRSF038150	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41	SUPFAM:SSF47616
TMHMM:TMhelix	InterPro:Thioredoxin-like_fold	UniParc:UPI0004EE9674	SEG:seg	:	:

Description

BnaAnng22370DBnaAnng22370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM94]

Coordinates

chrLK035299:+:14299..16118

Molecular Weight (calculated)

35573.2 Da

IEP (calculated)

4.944

GRAVY (calculated)

-0.346

Length

314 amino acids

Sequence
(BLAST)

001: MEGDQDTSGF TLVTRKPCFG LPTACPNCLP AYIYLKLAQL PFQLAFNSTF PDSEELPYFE SGTYVAYNNE DGGVIEKLEK DGIVNLDSQL QSLPDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GVCASKIYYS DLPWVIGKVL FYKQTYLTKN RLGLTKENAE QREKLIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFFL
201: SHMLFTIQVL PETSVLRRKL LEHSNLVRYA ERLKSEFLEE SSSSPSPPLH SFPSSFSGKG SKPKNKPKAE KSEEEKKIKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDEVEY EDDD

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.