Factsheet for Bra038562.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019509.1-P
Bra024815.1-P
Bra026586.1-P
Bra033788.1-P
Bra035826.1-P
Bra038249.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	Bra024815.1-P	AT2G02560.1	21798944
AT2G19080.1	Bra026586.1-P	AT2G02560.1	21798944
AT2G19080.1	Bra035826.1-P	AT3G20000.1	17981999
AT2G19080.1	Bra038249.1-P	AT3G20000.1	17981999
AT2G19080.1	Bra019509.1-P	AT3G47640.1	21798944
AT2G19080.1	Bra033788.1-P	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66507	Canola	cytosol	99.04	99.04
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	85.99	85.71
Bra038838.1-P	Field mustard	cytosol	58.92	80.09
VIT_11s0103g00300.t01	Wine grape	cytosol	58.28	56.13
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	57.32	55.21
PGSC0003DMT400021961	Potato	cytosol	57.32	55.21
KRH19062	Soybean	cytosol, nucleus, plasma membrane	52.23	51.25
KRH02821	Soybean	mitochondrion	51.59	50.47
KRH12285	Soybean	cytosol	51.59	49.39
KRH37302	Soybean	cytosol	51.27	48.94
OQU75905	Sorghum	cytosol, plastid	48.73	45.4
TraesCS7B01G030900.1	Wheat	plastid	48.41	45.1
TraesCS7A01G130600.1	Wheat	plastid	47.77	44.51
TraesCS7D01G130000.1	Wheat	plastid	47.45	42.94
GSMUA_Achr1P15670_001	Banana	cytosol	41.08	42.86
Os06t0168000-01	Rice	cytosol, peroxisome	46.82	42.49
Zm00001d045193_P002	Maize	mitochondrion	48.09	40.92
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	41.08	40.69

Protein Annotations

MapMan:23.2.2.2	EnsemblPlantsGene:Bra038562	EnsemblPlants:Bra038562.1	EnsemblPlants:Bra038562.1-P	GO:GO:0001401	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
InterPro:Glutathione-S-Trfase_C_sf	UniProt:M4FBU6	InterPro:Metaxin	InterPro:Metaxin_GST	PFAM:PF17171	PFAM:PF17172
PIRSF:PIRSF038150	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41	SUPFAM:SSF47616	TMHMM:TMhelix	InterPro:Thioredoxin-like_fold
UniParc:UPI0002541FC6	SEG:seg	:	:	:	:

Description

AT2G19080 (E=2e-124) | metaxin-related

Coordinates

chrA09:+:5349932..5351539

Molecular Weight (calculated)

35616.3 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.357

Length

314 amino acids

Sequence
(BLAST)

001: MEGDQDTSDF TLVTRKPCFG LPTACPNCLP AYIYLKLAQL PFQLAFNSTF PDSEELPYFE SGTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLPDYLSLK
101: ALIVSWLDEA LTYEIWVGTE GVCASKIYYS DLPWVIGKVL FYKQTYLTKN RLGLTKENAE QREKLIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFFL
201: SHMLFTIQVL PETSVLRRKL LEHSNLVRYA ERLKSEFLEE SSSSPSPPLH SFPSSFSGKG SKPKNKPKAE KSEEEKKIKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDEVEY EDDD

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.