Factsheet for Bra038249.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009383.1-P
Bra010946.1-P
Bra030044.1-P
Bra032826.1-P
Bra032980.1-P
Bra038562.1-P
Bra038838.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	Bra010946.1-P	AT1G27390.1	17981999
AT3G20000.1	Bra030044.1-P	AT1G27390.1	17981999
AT3G20000.1	Bra032826.1-P	AT1G27390.1	17981999
AT3G20000.1	Bra038562.1-P	AT2G19080.1	17981999
AT3G20000.1	Bra038838.1-P	AT2G19080.1	17981999
AT3G20000.1	Bra032980.1-P	AT3G27080.1	17981999
AT3G20000.1	Bra009383.1-P	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42223	Canola	cytosol	99.35	99.35
AT3G20000.1	Thale cress	cytosol	83.55	83.82
Bra035826.1-P	Field mustard	cytosol	77.1	77.35
VIT_03s0097g00590.t01	Wine grape	cytosol	74.84	75.08
Solyc06g007710.2.1	Tomato	plastid	74.19	73.25
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	73.55	73.08
KRH60449	Soybean	mitochondrion	71.29	71.75
KRH41747	Soybean	mitochondrion	71.61	71.61
PGSC0003DMT400051986	Potato	cytosol, plastid	15.48	65.75
EER94935	Sorghum	cytosol, plastid	69.35	64.56
Zm00001d028971_P001	Maize	cytosol	69.35	64.37
GSMUA_Achr8P01650_001	Banana	plastid	66.77	64.09
Zm00001d047566_P008	Maize	cytosol	68.39	63.66
Os03t0323800-01	Rice	cytosol, mitochondrion	68.39	62.91
HORVU4Hr1G051720.1	Barley	cytosol	67.42	62.2
TraesCS4A01G129200.1	Wheat	plastid	67.42	62.2
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	67.1	61.9
TraesCS4B01G175300.1	Wheat	cytosol	67.1	61.9
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	66.13	61.38
GSMUA_Achr10P...	Banana	extracellular, vacuole	36.45	60.11
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	63.55	56.13
KXG32258	Sorghum	plastid	59.35	54.6
TraesCS3A01G188600.1	Wheat	cytosol	58.06	53.73
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	57.74	53.59
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	57.42	53.29
Bra018846.1-P	Field mustard	cytosol	54.84	53.12
GSMUA_Achr10P...	Banana	plastid	36.45	52.8
Zm00001d008242_P001	Maize	mitochondrion	57.42	52.66
HORVU3Hr1G039040.6	Barley	mitochondrion	58.71	50.0
Zm00001d040440_P001	Maize	plastid	28.06	47.54
Os01t0276200-00	Rice	mitochondrion	54.84	41.06

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	EnsemblPlantsGene:Bra038249	EnsemblPlants:Bra038249.1	EnsemblPlants:Bra038249.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	InterPro:IPR023614	UniProt:M4FAY3	PFAM:PF01459
PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI0002544ABF

Description

AT3G20000 (E=5e-152) TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel

Coordinates

chrA01:-:21313580..21316105

Molecular Weight (calculated)

34335.0 Da

IEP (calculated)

7.724

GRAVY (calculated)

-0.251

Length

310 amino acids

Sequence
(BLAST)

001: MADLFPPLVT AQIDGKPPKA DEKVDYSNLP CPAPYDELHR EAYMSLKSET FEGLRFDFSK GLNQRFSLSH SVMMGPTEVP SQSPDTTIKI PTAHYEFGAN
101: YFDPKLMLVG RVMTDGRLNA RLKADLSDKL ILKANAQLTG EPHMSHAVFN FDYMGKDYRA QLQLGNSALV GATYIQSVTP RLSLGGEVFW AGVPRKSGIG
201: YAARYETDQM VASAQVASTG NVVMNYVQKI SEKVSLATDF VYNYFSRDVV ASVGYDYLLR QSRVRGKIDS NGVTSALLEE RLSMGLNFLL SAEVDHKKKD
301: YKFGFGLTVG

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.