Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P15670_001 | |
| GSMUA_Achr8P00730_001 | |
| GSMUA_Achr9P14860_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P01650_001 | Banana | plastid | 81.91 | 47.68 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 78.72 | 44.31 |
| VIT_03s0097g00590.t01 | Wine grape | cytosol | 70.21 | 42.72 |
| Zm00001d047566_P008 | Maize | cytosol | 74.47 | 42.04 |
| KRH60449 | Soybean | mitochondrion | 68.62 | 41.88 |
| Solyc06g082800.2.1 | Tomato | cytosol, nucleus, peroxisome | 69.15 | 41.67 |
| KRH41747 | Soybean | mitochondrion | 68.62 | 41.61 |
| EER94935 | Sorghum | cytosol, plastid | 73.4 | 41.44 |
| Solyc06g007710.2.1 | Tomato | plastid | 69.15 | 41.4 |
| HORVU4Hr1G051720.1 | Barley | cytosol | 73.94 | 41.37 |
| Zm00001d028971_P001 | Maize | cytosol | 73.4 | 41.32 |
| Os03t0323800-01 | Rice | cytosol, mitochondrion | 73.94 | 41.25 |
| TraesCS4D01G177200.1 | Wheat | cytosol, mitochondrion, unclear | 73.4 | 41.07 |
| TraesCS4B01G175300.1 | Wheat | cytosol | 73.4 | 41.07 |
| TraesCS4A01G129200.1 | Wheat | plastid | 73.4 | 41.07 |
| GSMUA_Achr2P11550_001 | Banana | cytosol, extracellular, plastid, vacuole | 76.06 | 40.74 |
| CDX82267 | Canola | cytosol | 61.17 | 37.22 |
| CDY42223 | Canola | cytosol | 61.17 | 37.1 |
| CDY33440 | Canola | cytosol | 61.17 | 37.1 |
| KXG32258 | Sorghum | plastid | 66.49 | 37.09 |
| Zm00001d008242_P001 | Maize | mitochondrion | 66.49 | 36.98 |
| AT3G20000.1 | Thale cress | cytosol | 60.64 | 36.89 |
| Bra038249.1-P | Field mustard | cytosol | 60.11 | 36.45 |
| CDY36066 | Canola | cytosol | 59.04 | 35.92 |
| AT1G50400.1 | Thale cress | cytosol | 57.45 | 34.84 |
| TraesCS3D01G192000.1 | Wheat | cytosol, nucleus, peroxisome | 61.17 | 34.43 |
| TraesCS3A01G188600.1 | Wheat | cytosol | 61.17 | 34.33 |
| TraesCS3B01G217800.1 | Wheat | cytosol, nucleus, peroxisome | 60.64 | 34.13 |
| CDY24571 | Canola | cytosol | 52.66 | 32.04 |
| Bra035826.1-P | Field mustard | cytosol | 52.13 | 31.72 |
| CDY25368 | Canola | cytosol | 51.6 | 31.39 |
| HORVU3Hr1G039040.6 | Barley | mitochondrion | 60.64 | 31.32 |
| Os01t0276200-00 | Rice | mitochondrion | 67.02 | 30.43 |
| CDY37141 | Canola | cytosol | 46.81 | 27.5 |
| CDY22793 | Canola | cytosol | 45.21 | 26.56 |
| Bra018846.1-P | Field mustard | cytosol | 45.21 | 26.56 |
| GSMUA_Achr10P... | Banana | plastid | 8.51 | 7.48 |
| Zm00001d040440_P001 | Maize | plastid | 5.32 | 5.46 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:23.2.1.6 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008320 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030150 | GO:GO:0055085 |
| EnsemblPlantsGene:GSMUA_Achr10G05160_001 | EnsemblPlants:GSMUA_Achr10P05160_001 | EnsemblPlants:GSMUA_Achr10T05160_001 | InterPro:IPR023614 | UniProt:M0RFJ3 | PFAM:PF01459 |
| PANTHER:PTHR10802 | PANTHER:PTHR10802:SF2 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | InterPro:Tom40 | UniParc:UPI00029694CC |
Description
Mitochondrial import receptor subunit TOM40 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G05160_001]
Coordinates
chr10:-:14851909..14856392
Molecular Weight (calculated)
21098.0 Da
IEP (calculated)
7.000
GRAVY (calculated)
-0.065
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: METATCCCCT VFWCQSFLYL TSNAEYFLHV QGTDFRSQLQ IGNNAFYGGN YIQSISPHLS LGTEIFWLGH QRKSGIGFAA RYNTDNMVAT GQVASTGIVA
101: LSYVQKVSEK VSLASDFMYN HLTQDVTSSF GYDYILRQCR LRGKIDSNGV FAAFLEERLN MGVNFILSAE VDHRKKDYKF GFGMTVGE
101: LSYVQKVSEK VSLASDFMYN HLTQDVTSSF GYDYILRQCR LRGKIDSNGV FAAFLEERLN MGVNFILSAE VDHRKKDYKF GFGMTVGE
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
Arabidopsis Description
TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.