CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82614
CDX84923
CDX90082
CDY03366
CDY03918
CDY11814
CDY15710
CDY21581
CDY27615
CDY28496
CDY34181
CDY39135
CDY66507

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	CDX84923	AT1G27390.1	17981999
AT3G20000.1	CDX90082	AT1G27390.1	17981999
AT3G20000.1	CDY03918	AT1G27390.1	17981999
AT3G20000.1	CDY11814	AT1G27390.1	17981999
AT3G20000.1	CDY15710	AT1G27390.1	17981999
AT3G20000.1	CDY27615	AT1G27390.1	17981999
AT3G20000.1	CDX82614	AT2G19080.1	17981999
AT3G20000.1	CDY03366	AT2G19080.1	17981999
AT3G20000.1	CDY39135	AT2G19080.1	17981999
AT3G20000.1	CDY66507	AT2G19080.1	17981999
AT3G20000.1	CDY28496	AT3G27080.1	17981999
AT3G20000.1	CDY34181	AT3G27080.1	17981999
AT3G20000.1	CDY21581	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035826.1-P	Field mustard	cytosol	99.68	99.68
CDY24571	Canola	cytosol	98.71	98.71
CDX82267	Canola	cytosol	78.32	78.32
AT3G20000.1	Thale cress	cytosol	78.32	78.32
CDY36066	Canola	cytosol	77.67	77.67
CDY33440	Canola	cytosol	77.35	77.1
CDY42223	Canola	cytosol	77.35	77.1
VIT_03s0097g00590.t01	Wine grape	cytosol	66.99	66.99
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	66.34	65.71
KRH60449	Soybean	mitochondrion	64.08	64.29
KRH41747	Soybean	mitochondrion	64.08	63.87
Solyc06g007710.2.1	Tomato	plastid	64.4	63.38
PGSC0003DMT400051986	Potato	cytosol, plastid	13.92	58.9
EER94935	Sorghum	cytosol, plastid	62.46	57.96
GSMUA_Achr8P01650_001	Banana	plastid	60.52	57.89
Zm00001d028971_P001	Maize	cytosol	62.46	57.78
Zm00001d047566_P008	Maize	cytosol	61.81	57.36
Os03t0323800-01	Rice	cytosol, mitochondrion	62.46	57.27
HORVU4Hr1G051720.1	Barley	cytosol	61.81	56.85
TraesCS4A01G129200.1	Wheat	plastid	61.81	56.85
TraesCS4B01G175300.1	Wheat	cytosol	61.49	56.55
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	61.49	56.55
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	60.84	56.29
CDY37141	Canola	cytosol	55.02	53.12
CDY22793	Canola	cytosol	54.37	52.5
GSMUA_Achr10P...	Banana	extracellular, vacuole	31.39	51.6
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	57.93	51.0
GSMUA_Achr10P...	Banana	plastid	34.95	50.47
KXG32258	Sorghum	plastid	54.37	49.85
TraesCS3A01G188600.1	Wheat	cytosol	53.4	49.25
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	53.07	49.1
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	53.07	49.1
Zm00001d008242_P001	Maize	mitochondrion	53.4	48.82
HORVU3Hr1G039040.6	Barley	mitochondrion	55.66	47.25
Zm00001d040440_P001	Maize	plastid	27.51	46.45
Os01t0276200-00	Rice	mitochondrion	49.51	36.96

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:A0A078GL74	UniProt:A0A078GL74	EnsemblPlants:CDY25368	ProteinID:CDY25368
ProteinID:CDY25368.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00029490001
InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
InterPro:Tom40	UniParc:UPI0004EEA25A	:	:	:	:

Description

BnaA05g19160DBnaA05g19160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL74]

Coordinates

chrLK032174:+:301065..303751

Molecular Weight (calculated)

34339.2 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.235

Length

309 amino acids

Sequence
(BLAST)

001: MADLFPPLVT AQIDDKPKVD EKVDYSNLPC PVPYDELHRE AYISLKTENF EGFRFDFTKG LNQKFALCHS VMMGPMEVPS QSPDTTIKIP TAHYEFGANY
101: ADPKLMLVGR VMTDGRTSAR VRADLTDKLM MKANAQITNE PHMSSAMFHF DYMGSDYRAQ LQFGNSALIG ANYIQSVTPR LSLGGEVFWA GGPRKSGIGY
201: AARYETDKMV ASGQVASTGL LLMNYVQKVS DKVSLATDFM YNVFSREAVA SVGYDYMLRQ ARVRGKIDSN GIASALLEER LSMGLNFLIS AELDHKKKDY
301: KFGFGLTVG

Best Arabidopsis Sequence Match ( AT1G50400.1 )
(BLAST)

001: MEGFSPPINT AQVDAKTKLD EKVDYSNLPC PVLYEELNRE ATMALKPELF EGFRLDYNKS LNQKFFLSHS ILMGPTEVPN PTPSSEIIKI PTANYDFGAG
101: FIDPKLYLIG RITTDGRLNA RAKFDLTDNF SVKANALLTD EEDKSQGHLV IDYKGSDYRT QLQLGNNSVY AANYIQHVTP HLSLGGEAFW LGQQLMSGVG
201: YAARYETDKT VASGQIASTG VAVMNYVHKV SEKLSFATDF IYNYLSRDVT ASVGYDLITR QSRLRGKVDS NGVVAAYLEE QLPIGLRFLL SAEVDHVKKD
301: YKFGFGVNAF

Arabidopsis Description

TOM40-2Probable mitochondrial import receptor subunit TOM40-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.