Factsheet for Bra018846.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22793	Canola	cytosol	99.06	99.06
AT1G50400.1	Thale cress	cytosol	59.69	61.61
VIT_03s0097g00590.t01	Wine grape	cytosol	55.0	56.96
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	54.69	56.09
Bra035826.1-P	Field mustard	cytosol	53.12	55.02
Bra038249.1-P	Field mustard	cytosol	53.12	54.84
Solyc06g007710.2.1	Tomato	plastid	53.12	54.14
KRH60449	Soybean	mitochondrion	51.56	53.57
PGSC0003DMT400051986	Potato	cytosol, plastid	12.19	53.42
KRH41747	Soybean	mitochondrion	51.25	52.9
EER94935	Sorghum	cytosol, plastid	51.56	49.55
Zm00001d028971_P001	Maize	cytosol	51.56	49.4
TraesCS4A01G129200.1	Wheat	plastid	51.56	49.11
HORVU4Hr1G051720.1	Barley	cytosol	51.56	49.11
Zm00001d047566_P008	Maize	cytosol	50.94	48.95
GSMUA_Achr8P01650_001	Banana	plastid	49.38	48.92
TraesCS4B01G175300.1	Wheat	cytosol	51.25	48.81
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	51.25	48.81
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	50.94	48.8
Os03t0323800-01	Rice	cytosol, mitochondrion	50.31	47.77
KXG32258	Sorghum	plastid	47.81	45.4
GSMUA_Achr10P...	Banana	extracellular, vacuole	26.56	45.21
Zm00001d008242_P001	Maize	mitochondrion	47.5	44.97
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	46.56	44.61
TraesCS3A01G188600.1	Wheat	cytosol	46.56	44.48
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	45.94	44.01
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	47.19	43.02
HORVU3Hr1G039040.6	Barley	mitochondrion	46.88	41.21
GSMUA_Achr10P...	Banana	plastid	26.56	39.72
Zm00001d040440_P001	Maize	plastid	22.19	38.8
Os01t0276200-00	Rice	mitochondrion	43.44	33.57

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	EnsemblPlantsGene:Bra018846	EnsemblPlants:Bra018846.1	EnsemblPlants:Bra018846.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	InterPro:IPR023614	UniProt:M4DQQ3	PFAM:PF01459
PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI000253EAF3

Description

AT1G50400 (E=5e-052) | porin family protein

Coordinates

chrA06:-:1635287..1637477

Molecular Weight (calculated)

35977.1 Da

IEP (calculated)

8.402

GRAVY (calculated)

-0.257

Length

320 amino acids

Sequence
(BLAST)

001: MAGFASPNVT AQFHSKTKIE EKVDYSNLPC PKPYEDIHLE ATISLKPELF EGFRLNYTKR MNHKFSLIHS LLMGNSEFPA ERSQHIFKTP TSSYEFGANL
101: IDPKLMLDGR LMMDGTVIAR FNSVLKENFT IKTTAQLTNE LDQSQGVFTV DYKGSDYRTQ FQLGNYKNQF KPGTSSLFRA NYIQHVTPKL SLGGEVLYLS
201: EHRKSVVGYV ARYETDKMVA SGQVASSGVA IMNYVHKVTD KISLAAEFFY SFMLRDGAAS VGYDLMFRQS RVRGKIDSNG VVFAHVEEQL CPGLGLLLCA
301: EVDHVKTDYK FGLGVKYEGL

Best Arabidopsis Sequence Match ( AT1G50400.1 )
(BLAST)

001: MEGFSPPINT AQVDAKTKLD EKVDYSNLPC PVLYEELNRE ATMALKPELF EGFRLDYNKS LNQKFFLSHS ILMGPTEVPN PTPSSEIIKI PTANYDFGAG
101: FIDPKLYLIG RITTDGRLNA RAKFDLTDNF SVKANALLTD EEDKSQGHLV IDYKGSDYRT QLQLGNNSVY AANYIQHVTP HLSLGGEAFW LGQQLMSGVG
201: YAARYETDKT VASGQIASTG VAVMNYVHKV SEKLSFATDF IYNYLSRDVT ASVGYDLITR QSRLRGKVDS NGVVAAYLEE QLPIGLRFLL SAEVDHVKKD
301: YKFGFGVNAF

Arabidopsis Description

TOM40-2Probable mitochondrial import receptor subunit TOM40-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.