Factsheet for Bra030044.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035826.1-P
Bra038249.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	Bra035826.1-P	AT3G20000.1	17981999
AT1G27390.1	Bra038249.1-P	AT3G20000.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15710	Canola	cytosol	97.21	98.58
Bra032826.1-P	Field mustard	cytosol	78.14	79.25
Bra010946.1-P	Field mustard	cytosol	63.26	65.07
AT1G27390.1	Thale cress	cytosol	62.79	64.29
KRH31475	Soybean	mitochondrion	50.23	53.73
PGSC0003DMT400052223	Potato	cytosol	50.23	52.68
Solyc02g094140.2.1	Tomato	cytosol	48.84	51.47
Solyc02g068130.2.1	Tomato	plastid	48.37	50.98
KRG97423	Soybean	cytosol	51.16	50.69
Bra032980.1-P	Field mustard	cytosol	40.93	44.22
PGSC0003DMT400056935	Potato	cytosol	39.07	43.75
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	40.93	43.35
EES01977	Sorghum	cytosol	40.47	42.86
PGSC0003DMT400056939	Potato	cytosol	33.49	42.6
Zm00001d012017_P002	Maize	mitochondrion	40.0	42.57
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	14.88	42.11
Os01t0921600-01	Rice	mitochondrion, plastid	37.21	39.6
TraesCS3A01G429800.1	Wheat	cytosol	38.6	39.52
TraesCS3D01G425100.1	Wheat	cytosol	38.14	39.23
TraesCS3B01G467700.1	Wheat	golgi	37.67	38.76
Zm00001d040209_P001	Maize	cytosol	25.12	33.13
HORVU3Hr1G094550.2	Barley	plastid	22.33	21.43
HORVU7Hr1G075380.6	Barley	cytosol, plastid	13.49	17.68

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	EnsemblPlantsGene:Bra030044	EnsemblPlants:Bra030044.1	EnsemblPlants:Bra030044.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0045040	InterPro:IPR011990	UniProt:M4EMM4	PFAM:PD102047
PFAM:PF06552	PANTHER:PTHR32409	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00025411B1	SEG:seg	:	:	:	:

Description

AT1G27390 (E=2e-066) TOM20-2 | TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2); P-P-bond-hydrolysis-driven protein transmembrane transporter/ metal ion binding

Coordinates

chrA07:+:6988230..6989410

Molecular Weight (calculated)

23068.4 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.362

Length

215 amino acids

Sequence
(BLAST)

001: MEFSAADFDR LMMVDLARNA CEEQYKKDPL DSENLLKWGG ALLELSQFQS VADAKLMLDD ALSKFEEVLT INPGKHQALW CLGNAYSSQA FLNPDSDVAQ
101: GLFDKAADYF ERAENMDPGN EMYLKSMEVA TEGPKLHKEI HKHGGMMQQA LAGGGGGGGG GGGPSASSNA GGGKKNNKMK NNDFTYDVCG WIILAFGIVA
201: WVGMAKSLGP PPPAR

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.