Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G425100.1 | Wheat | cytosol | 98.09 | 98.09 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 96.65 | 96.19 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 76.56 | 79.21 |
| EES01977 | Sorghum | cytosol | 66.51 | 68.47 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 66.03 | 67.98 |
| Zm00001d012017_P002 | Maize | mitochondrion | 63.64 | 65.84 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 53.11 | 55.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.11 | 55.22 |
| GSMUA_Achr8P09300_001 | Banana | cytosol | 52.15 | 54.23 |
| Solyc02g068130.2.1 | Tomato | plastid | 51.67 | 52.94 |
| AT5G40930.1 | Thale cress | cytosol | 45.93 | 51.34 |
| PGSC0003DMT400052223 | Potato | cytosol | 49.28 | 50.24 |
| KRG94268 | Soybean | nucleus | 50.24 | 50.24 |
| Solyc02g094140.2.1 | Tomato | cytosol | 48.33 | 49.51 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 40.19 | 49.12 |
| KRH57705 | Soybean | nucleus | 49.28 | 49.05 |
| KRH31475 | Soybean | mitochondrion | 45.93 | 47.76 |
| HORVU3Hr1G094550.2 | Barley | plastid | 50.24 | 46.88 |
| PGSC0003DMT400056939 | Potato | cytosol | 36.84 | 45.56 |
| KRG97423 | Soybean | cytosol | 46.41 | 44.7 |
| PGSC0003DMT400056935 | Potato | cytosol | 40.67 | 44.27 |
| CDY34181 | Canola | cytosol | 42.11 | 44.22 |
| Bra032980.1-P | Field mustard | cytosol | 42.11 | 44.22 |
| AT1G27390.1 | Thale cress | cytosol | 44.02 | 43.81 |
| CDY28496 | Canola | cytosol | 41.63 | 43.07 |
| CDY27615 | Canola | cytosol | 42.58 | 41.98 |
| Bra032826.1-P | Field mustard | cytosol | 42.58 | 41.98 |
| CDX84923 | Canola | cytosol | 41.63 | 41.83 |
| AT3G27080.1 | Thale cress | cytosol | 40.19 | 41.58 |
| CDY03918 | Canola | cytosol | 41.15 | 41.35 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 14.83 | 40.79 |
| CDY15710 | Canola | cytosol | 38.76 | 38.21 |
| CDY11814 | Canola | cytosol | 37.8 | 37.98 |
| Bra030044.1-P | Field mustard | cytosol | 38.76 | 37.67 |
| CDX90082 | Canola | cytosol | 36.84 | 37.02 |
| Bra010946.1-P | Field mustard | cytosol | 36.36 | 36.36 |
| CDY35747 | Canola | cytosol | 18.18 | 29.69 |
| AT3G27070.2 | Thale cress | plasma membrane | 32.54 | 27.42 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 |
| PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt |
| InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS3B01G467700 | EnsemblPlants:TraesCS3B01G467700.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3B:+:710588839..710592956
Molecular Weight (calculated)
23185.2 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.528
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMAAMNDPE RLFFFDLACK TAKSTYDENP LDADNLTRWG GALLELSQMH NGPESLKCLE DAESKLDEAL RIDPNKADAL WCLGNALTSR GFFTSETVQA
101: NECFEKATGC FQRAVDVEPA NELYRKSLDL SSKAPELHME IHRQIASQAS QGAPSSSNAR QSRKKKKDND FWYDLAGWGI LLVGIGVWIG VANSQAKEAQ
201: PPHMSQPNM
101: NECFEKATGC FQRAVDVEPA NELYRKSLDL SSKAPELHME IHRQIASQAS QGAPSSSNAR QSRKKKKDND FWYDLAGWGI LLVGIGVWIG VANSQAKEAQ
201: PPHMSQPNM
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.