Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G313000.1 | Wheat | nucleus | 97.19 | 97.19 |
| TraesCS3D01G141300.1 | Wheat | nucleus | 96.25 | 96.86 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 91.25 | 93.89 |
| Os01t0200500-01 | Rice | nucleus | 82.5 | 80.73 |
| EES02290 | Sorghum | nucleus, plastid | 80.62 | 80.12 |
| Zm00001d008871_P001 | Maize | mitochondrion | 78.75 | 78.26 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 39.06 | 55.31 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 46.88 | 47.32 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 46.88 | 45.32 |
| KRH23409 | Soybean | mitochondrion | 46.56 | 45.02 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 46.56 | 44.48 |
| Bra027174.1-P | Field mustard | plastid | 44.38 | 42.52 |
| AT3G16310.1 | Thale cress | plastid | 43.12 | 41.95 |
| TraesCS3B01G308400.1 | Wheat | plastid | 34.06 | 34.6 |
| CDY30157 | Canola | plastid | 45.0 | 33.96 |
| Solyc03g120880.2.1 | Tomato | nucleus | 46.56 | 29.68 |
| CDX97739 | Canola | plastid | 44.06 | 21.14 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0031965 | InterPro:IPR007846 | InterPro:IPR012677 | InterPro:Nucleoporin_NUP53 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 | PFscan:PS51472 | PANTHER:PTHR21527 | InterPro:RBD_domain_sf |
| InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS3B01G158900 | EnsemblPlants:TraesCS3B01G158900.1 | TIGR:cd12441 | SEG:seg |
Description
No Description!
Coordinates
chr3B:-:154206576..154210975
Molecular Weight (calculated)
34897.2 Da
IEP (calculated)
9.519
GRAVY (calculated)
-0.603
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATRPDHRR HQSPFLRDLS SPISSSFRMP PASVRREAQA STPPPPPPLL SLDDLSRHSP SPPPYTPPQA AMSPSPPPPR GGLFSTPQRS NGSPSPAAWW
101: SPSREEKARD SSPVDGVVHQ QQSPATASGQ QPQQQQQQVA LITLPPPREV ARPEMPRDSV LSTGRVDEEE WVTVFGFLPV DTNFVLREFE KCGLVLRHVP
201: GPRDANWMHI LYQSRHDAQK ALAKHGQQLN SVLIIGVKQV DPWQRLYLNE NTDDTYNGGM SVPFPLQAVA PSGFTTRNAL APLPSNSMQN GNEGNRGASG
301: AIASPAKSVL SKVMDVMFGL
101: SPSREEKARD SSPVDGVVHQ QQSPATASGQ QPQQQQQQVA LITLPPPREV ARPEMPRDSV LSTGRVDEEE WVTVFGFLPV DTNFVLREFE KCGLVLRHVP
201: GPRDANWMHI LYQSRHDAQK ALAKHGQQLN SVLIIGVKQV DPWQRLYLNE NTDDTYNGGM SVPFPLQAVA PSGFTTRNAL APLPSNSMQN GNEGNRGASG
301: AIASPAKSVL SKVMDVMFGL
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.