Factsheet for TraesCS1B01G427700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G17080.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G17080.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G17080.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	97.33	93.81
TraesCS1A01G399600.1	Wheat	cytosol	74.33	72.02
Os05t0564800-01	Rice	plasma membrane	48.66	71.65
EES18686	Sorghum	plasma membrane	64.17	68.97
Zm00001d009578_P001	Maize	plasma membrane	58.29	64.88
VIT_19s0135g00070.t01	Wine grape	plasma membrane	41.71	54.55
CDX83927	Canola	plasma membrane	45.99	53.75
AT1G17080.1	Thale cress	plasma membrane	43.85	53.25
Bra040984.1-P	Field mustard	plasma membrane	43.32	51.92
CDX96793	Canola	plasma membrane	43.32	51.92
KRH21829	Soybean	plasma membrane	44.38	51.88
CDY21766	Canola	plasma membrane	39.04	50.34
CDX81802	Canola	plasma membrane	39.04	49.66
Bra026690.1-P	Field mustard	plasma membrane	38.5	48.32
AT1G53560.1	Thale cress	plasma membrane	37.97	46.41
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	29.95	46.28
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	41.71	44.07
CDY24088	Canola	cytosol	34.76	42.48
Bra039680.1-P	Field mustard	cytosol	34.76	42.48
KRH13519	Soybean	cytosol	39.04	42.2
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	36.36	41.46
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	35.83	40.85
CDX75777	Canola	cytosol	29.95	40.29
CDX98477	Canola	cytosol	29.41	39.57
CDX97586	Canola	cytosol	29.41	39.29
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	27.27	38.64
Solyc07g061970.2.1	Tomato	cytosol	37.43	35.9
TraesCS7B01G250000.2	Wheat	plastid	32.62	35.88
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	44.92	33.33
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	36.9	31.08

Protein Annotations

EnsemblPlants:TraesCS1B01G427700.1	EnsemblPlantsGene:TraesCS1B01G427700	InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF16	SEG:seg
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:653045617..653048216

Molecular Weight (calculated)

19948.9 Da

IEP (calculated)

7.578

GRAVY (calculated)

-0.213

Length

187 amino acids

Sequence
(BLAST)

001: MGAGQDLEAG AGDGGEKGMA HSSSSGPLPP SEPPHLRGQD PAQYQYGTFH PPAPHPDVRP HPPVGFPQPA PPPGFQQQQQ PYAPADPYYA QGYQAAPGYG
101: PVVQGRPVEG RPMRMRRLPC CGLGMGWLLF IAGFFFAAIP WYIGAFILIC VRVHDHREKP GYVACTVAAI IAAIVIPLGV TKGTDSW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.