Factsheet for Bra026690.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P
Bra026434.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G17080.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G17080.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G17080.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G17080.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21766	Canola	plasma membrane	93.29	95.86
CDX81802	Canola	plasma membrane	89.26	90.48
AT1G17080.1	Thale cress	plasma membrane	74.5	72.08
Bra040984.1-P	Field mustard	plasma membrane	73.83	70.51
VIT_19s0135g00070.t01	Wine grape	plasma membrane	53.02	55.24
KRH21829	Soybean	plasma membrane	53.69	50.0
Os05t0564800-01	Rice	plasma membrane	40.94	48.03
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	46.98	46.05
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	46.31	45.7
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	77.18	45.63
EES18686	Sorghum	plasma membrane	51.68	44.25
Os01t0242900-01	Rice	plasma membrane	46.31	44.23
Zm00001d009578_P001	Maize	plasma membrane	49.66	44.05
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	35.57	43.8
TraesCS3D01G171700.1	Wheat	cytosol, plasma membrane, plastid	44.3	43.71
Bra039680.1-P	Field mustard	cytosol	44.3	43.14
Zm00001d039619_P003	Maize	cytosol	41.61	43.06
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	40.27	41.1
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	51.01	40.64
KRH13519	Soybean	cytosol	46.98	40.46
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	50.34	40.32
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	50.34	40.11
Zm00001d011536_P001	Maize	plasma membrane	48.99	39.89
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	48.32	38.5
Os01t0667100-01	Rice	plasma membrane	46.98	37.84
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	28.19	37.84
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	40.94	37.2
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	40.94	37.2
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	48.32	37.11
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	43.62	36.72
TraesCS1A01G399600.1	Wheat	cytosol	46.98	36.27
Bra032348.1-P	Field mustard	cytosol	38.26	33.73
Solyc07g061970.2.1	Tomato	cytosol	42.28	32.31
GSMUA_Achr6P13730_001	Banana	plasma membrane	45.64	31.63
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	40.27	27.03

Protein Annotations

EnsemblPlants:Bra026690.1	EnsemblPlants:Bra026690.1-P	EnsemblPlantsGene:Bra026690	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF30	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002542BC9
UniProt:M4ED30	MapMan:35.2	:	:	:	:

Description

AT1G17080 (E=1e-029) | unknown protein

Coordinates

chrA09:+:33227996..33228977

Molecular Weight (calculated)

16290.5 Da

IEP (calculated)

7.300

GRAVY (calculated)

-0.052

Length

149 amino acids

Sequence
(BLAST)

001: MGQAEEDKSK GFAEEEVNQH HHHHQYGTFQ GVSNYPQPSP PPGVYDSSAP HYVHGYHSVP GSFSLLNLIE GRPVTVRQRR LSCCGIGLGW FLFIVGFFLG
101: GIPWYVGMGI MIVGRRVDHR EKPGYIACTI AAILATIAVI LGVSKGAED

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.