Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
- nucleus 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 57.89 | 61.54 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 73.03 | 51.63 |
| AT1G17080.1 | Thale cress | plasma membrane | 51.97 | 51.3 |
| KRH21829 | Soybean | plasma membrane | 52.63 | 50.0 |
| CDX96793 | Canola | plasma membrane | 50.66 | 49.36 |
| Bra040984.1-P | Field mustard | plasma membrane | 50.66 | 49.36 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 35.53 | 48.65 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 48.03 | 48.34 |
| CDX81802 | Canola | plasma membrane | 46.71 | 48.3 |
| CDY21766 | Canola | plasma membrane | 46.05 | 48.28 |
| CDX83927 | Canola | plasma membrane | 50.66 | 48.12 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 38.16 | 47.93 |
| Os01t0242900-01 | Rice | plasma membrane | 48.68 | 47.44 |
| Bra026690.1-P | Field mustard | plasma membrane | 46.05 | 46.98 |
| AT1G53560.1 | Thale cress | plasma membrane | 46.71 | 46.41 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 46.05 | 46.36 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 43.42 | 45.21 |
| Zm00001d039619_P003 | Maize | cytosol | 42.76 | 45.14 |
| KRH13519 | Soybean | cytosol | 49.34 | 43.35 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 50.0 | 42.94 |
| CDY24088 | Canola | cytosol | 42.76 | 42.48 |
| Bra039680.1-P | Field mustard | cytosol | 42.11 | 41.83 |
| CDX75777 | Canola | cytosol | 37.5 | 41.01 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 44.08 | 40.85 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 44.08 | 40.85 |
| CDX98477 | Canola | cytosol | 35.53 | 38.85 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 33.55 | 38.64 |
| CDX97586 | Canola | cytosol | 35.53 | 38.57 |
| Solyc07g061970.2.1 | Tomato | cytosol | 46.05 | 35.9 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 44.08 | 30.18 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 50.0 | 30.16 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P19710_001 | EnsemblPlants:GSMUA_Achr2T19710_001 | EnsemblPlantsGene:GSMUA_Achr2G19710_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002961ECB |
| UniProt:M0S9G2 | MapMan:35.1 | : | : | : | : |
Description
Putative 60S ribosomal protein L18a-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G19710_001]
Coordinates
chr2:+:19686408..19691217
Molecular Weight (calculated)
16005.4 Da
IEP (calculated)
7.941
GRAVY (calculated)
0.226
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEEGKSKG GPQQYGTFQG APSYAQPAIG FPQPVPPPGH TAAHPFPPPQ QSGPAYYARG YHAVPGYAPV IEVVEGTPLR QPRLACCGLG IGWLLFIVGF
101: FLPAIPWYVG AFILLCVRVD YREKPGLVAC TIAAILAAIA ATVGATKGAD VW
101: FLPAIPWYVG AFILLCVRVD YREKPGLVAC TIAAILAAIA ATVGATKGAD VW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.