Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 3
- extracellular 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0509600-01 | |
| Os04t0471300-01 | |
| Os08t0497900-01 | |
| Os09t0481300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17080.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT1G17080.1 | Os04t0471300-01 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | Os08t0497900-01 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | Os09t0481300-01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 73.72 | 76.16 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 71.79 | 74.17 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 60.26 | 64.38 |
| Zm00001d039619_P003 | Maize | cytosol | 50.64 | 54.86 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 50.0 | 54.55 |
| AT1G17080.1 | Thale cress | plasma membrane | 53.21 | 53.9 |
| Bra040984.1-P | Field mustard | plasma membrane | 52.56 | 52.56 |
| CDX96793 | Canola | plasma membrane | 52.56 | 52.56 |
| Os05t0564800-01 | Rice | plasma membrane | 42.31 | 51.97 |
| CDX83927 | Canola | plasma membrane | 53.21 | 51.88 |
| AT1G53560.1 | Thale cress | plasma membrane | 48.72 | 49.67 |
| CDX81802 | Canola | plasma membrane | 46.15 | 48.98 |
| CDY21766 | Canola | plasma membrane | 45.51 | 48.97 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 37.82 | 48.76 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 47.44 | 48.68 |
| CDY24088 | Canola | cytosol | 47.44 | 48.37 |
| Bra039680.1-P | Field mustard | cytosol | 47.44 | 48.37 |
| KRH21829 | Soybean | plasma membrane | 49.36 | 48.12 |
| CDX98477 | Canola | cytosol | 41.67 | 46.76 |
| CDX97586 | Canola | cytosol | 41.67 | 46.43 |
| Bra026690.1-P | Field mustard | plasma membrane | 44.23 | 46.31 |
| CDX75777 | Canola | cytosol | 40.38 | 45.32 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 37.18 | 43.94 |
| Os01t0667100-01 | Rice | plasma membrane | 48.08 | 40.54 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 28.21 | 39.64 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 41.67 | 39.63 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 40.38 | 38.41 |
| KRH13519 | Soybean | cytosol | 42.31 | 38.15 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 51.28 | 37.21 |
| Solyc07g061970.2.1 | Tomato | cytosol | 41.67 | 33.33 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 52.56 | 32.54 |
| Os06t0359400-01 | Rice | plasma membrane | 29.49 | 29.49 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 40.38 | 28.38 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4327700 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | EMBL:AK071658 | ProteinID:BAD81631.1 | ProteinID:BAF04473.1 |
| ProteinID:BAS71282.1 | ProteinID:EEE54216.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | EnsemblPlantsGene:Os01g0242900 |
| EnsemblPlants:Os01t0242900-01 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF7 | UniProt:Q5NA71 | TMHMM:TMhelix | UniParc:UPI000049E819 |
| RefSeq:XP_015620879.1 | SEG:seg | : | : | : | : |
Description
Similar to 60S ribosomal protein L18A. (Os01t0242900-01);Conserved hypothetical protein. (Os01t0242900-02)
Coordinates
chr1:+:7876239..7878758
Molecular Weight (calculated)
15873.9 Da
IEP (calculated)
8.290
GRAVY (calculated)
-0.079
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGDERE KAKGGGGGGG GGGGGGEYGT FQGPPSYPPP RPPVVGYPQP APPPGLYGQG DPYYRPRGGY QGIPARDYEA GARGHGHDRL PCCGIGIGWF
101: LFIVGFFLGA IPWYVGAFLL WCSRVDYREK PGYVACAIAA VLATIAIIIG ATAGAA
101: LFIVGFFLGA IPWYVGAFLL WCSRVDYREK PGYVACAIAA VLATIAIIIG ATAGAA
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.