Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G345900.1 | Wheat | plastid | 61.54 | 63.58 |
| TraesCS7A01G338700.1 | Wheat | cytosol, plasma membrane, plastid | 62.18 | 63.4 |
| Zm00001d037067_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 58.33 | 56.52 |
| EES14576 | Sorghum | plastid | 58.97 | 56.1 |
| TraesCS7B01G250000.2 | Wheat | plastid | 59.62 | 54.71 |
| HORVU7Hr1G083340.1 | Barley | plastid | 62.82 | 49.25 |
| Os05t0564800-01 | Rice | plasma membrane | 30.13 | 37.01 |
| Os01t0667100-01 | Rice | plasma membrane | 35.9 | 30.27 |
| Os01t0242900-01 | Rice | plasma membrane | 29.49 | 29.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4340997 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | ProteinID:BAF19516.2 | ProteinID:BAS97698.1 | ProteinID:EEE65682.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | EnsemblPlantsGene:Os06g0359400 | EnsemblPlants:Os06t0359400-01 | PANTHER:PTHR10052 |
| PANTHER:PTHR10052:SF13 | UniProt:Q0DCA7 | TMHMM:TMhelix | UniParc:UPI000193432C | RefSeq:XP_015640885.1 | SEG:seg |
Description
Ribosomal protein L18a domain containing protein. (Os06t0359400-01)
Coordinates
chr6:-:14809950..14815773
Molecular Weight (calculated)
17064.8 Da
IEP (calculated)
6.875
GRAVY (calculated)
0.233
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEAEEPSTK LPSRSPLDGP APPPYHHHHY GTFLPPPPPQ QQQQQKPDGA ASNHPFPAGY AAQGVVAFPC TVQQLVLVEG VPIREPPLPF CGIGLGWILF
101: LLGFFLAALP WYAGAFILFF VALDHREKPG LIACTIAGIF VLVPFILNGI RVHPFW
101: LLGFFLAALP WYAGAFILFF VALDHREKPG LIACTIAGIF VLVPFILNGI RVHPFW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.