Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7D01G345900.1 | Wheat | plastid | 64.12 | 72.19 |
TraesCS7A01G338700.1 | Wheat | cytosol, plasma membrane, plastid | 62.94 | 69.93 |
Os06t0359400-01 | Rice | plasma membrane | 54.71 | 59.62 |
HORVU7Hr1G083340.1 | Barley | plastid | 64.71 | 55.28 |
Zm00001d037067_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 48.24 | 50.93 |
EES14576 | Sorghum | plastid | 47.06 | 48.78 |
TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.88 | 32.62 |
Protein Annotations
EnsemblPlants:TraesCS7B01G250000.2 | EnsemblPlantsGene:TraesCS7B01G250000 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF13 | SEG:seg |
TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:461239670..461241426
Molecular Weight (calculated)
18476.6 Da
IEP (calculated)
9.815
GRAVY (calculated)
0.186
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMQQTRDPT SKLPSASPFA GTSPPPYYHH HYGTFSPPAP PPPVAAVAYD PSLKGRSAQG VVAFPCTIQQ QVFVEGLPVR EPRLPFCGVG VGWALFLLGF
101: FLAAIPWYIG AFLLFFVALD HREKPGLIVC TVAFVSNGTS TMACRNRKFA SLDLNVTRRV VPKKLGQLNC
101: FLAAIPWYIG AFLLFFVALD HREKPGLIVC TVAFVSNGTS TMACRNRKFA SLDLNVTRRV VPKKLGQLNC
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.