Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G345900.1 | Wheat | plastid | 92.81 | 94.04 |
| HORVU7Hr1G083340.1 | Barley | plastid | 82.35 | 63.32 |
| TraesCS7B01G250000.2 | Wheat | plastid | 69.93 | 62.94 |
| Os06t0359400-01 | Rice | plasma membrane | 63.4 | 62.18 |
| Zm00001d037067_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 58.17 | 55.28 |
| EES14576 | Sorghum | plastid | 58.82 | 54.88 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 32.03 | 32.45 |
| TraesCS3A01G247400.1 | Wheat | cytosol, peroxisome, plasma membrane | 34.64 | 28.34 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 33.99 | 26.94 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G338700.1 | EnsemblPlantsGene:TraesCS7A01G338700 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF13 | SEG:seg |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:495572041..495573870
Molecular Weight (calculated)
16556.5 Da
IEP (calculated)
9.276
GRAVY (calculated)
0.450
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMQQTRDPT AKLPSAFPVA GASPPPPYHH HHYGTFSPPP PPPAAAAAYD PSLKGRAAQG VVAFPCTIQQ QVLVEGLPVR EPRLPFCGVG VGWVLFLLGF
101: FLAAIPWYIG AFLLFFVALD HREKPGLIAC TVAGIFAVVP FMLNGVRMRP FFF
101: FLAAIPWYIG AFLLFFVALD HREKPGLIAC TVAGIFAVVP FMLNGVRMRP FFF
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.