Factsheet for TraesCS3A01G247400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G17080.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G17080.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G17080.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT1G17080.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	93.58	93.58
Zm00001d011536_P001	Maize	plasma membrane	70.05	71.58
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	70.59	70.97
Os01t0667100-01	Rice	plasma membrane	70.05	70.81
VIT_19s0135g00070.t01	Wine grape	plasma membrane	43.85	57.34
AT1G17080.1	Thale cress	plasma membrane	45.45	55.19
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	43.32	53.64
CDX83927	Canola	plasma membrane	45.45	53.12
CDY21766	Canola	plasma membrane	41.18	53.1
CDX81802	Canola	plasma membrane	41.71	53.06
Bra040984.1-P	Field mustard	plasma membrane	43.85	52.56
CDX96793	Canola	plasma membrane	43.85	52.56
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	48.66	51.41
KRH21829	Soybean	plasma membrane	43.85	51.25
TraesCS1A01G399600.1	Wheat	cytosol	52.41	50.78
Bra026690.1-P	Field mustard	plasma membrane	40.11	50.34
AT1G53560.1	Thale cress	plasma membrane	39.04	47.71
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	29.41	45.45
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	38.5	43.9
CDY24088	Canola	cytosol	35.83	43.79
Bra039680.1-P	Field mustard	cytosol	35.83	43.79
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	37.97	43.29
KRH13519	Soybean	cytosol	39.04	42.2
CDX75777	Canola	cytosol	28.88	38.85
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	27.27	38.64
CDX98477	Canola	cytosol	28.34	38.13
CDX97586	Canola	cytosol	27.81	37.14
Solyc07g061970.2.1	Tomato	cytosol	37.43	35.9
TraesCS7A01G338700.1	Wheat	cytosol, plasma membrane, plastid	28.34	34.64
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	44.92	33.33
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	37.97	31.98

Protein Annotations

EnsemblPlants:TraesCS3A01G247400.1	EnsemblPlantsGene:TraesCS3A01G247400	InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF16	SEG:seg
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:465539918..465542255

Molecular Weight (calculated)

19953.9 Da

IEP (calculated)

7.276

GRAVY (calculated)

0.015

Length

187 amino acids

Sequence
(BLAST)

001: MGGEMPGTDD EGHSAPAPAS ASGFPPSAPP YYQQQQQQYG TFGAPSASGE FPQPAVGFPQ PAPPPGFRNY PPPPPPSYAV YPPLQAYSAA APYYAQGYQA
101: VQGYIPVVEG RPVRMRRLPC CGLGMGWFLF IIGFFFAAIP WYVGAFVLIC VRVHDYREKP GYVACTIAAS LAAIAMLLGA TKGAEVW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.