Factsheet for Zm00001d011536_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d016570_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G17080.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT1G17080.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT1G17080.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT1G17080.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT1G17080.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	94.54	93.01
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	72.13	70.59
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	71.58	70.05
Os01t0667100-01	Rice	plasma membrane	68.31	67.57
Zm00001d009578_P001	Maize	plasma membrane	55.74	60.71
VIT_19s0135g00070.t01	Wine grape	plasma membrane	43.17	55.24
AT1G17080.1	Thale cress	plasma membrane	46.45	55.19
Bra040984.1-P	Field mustard	plasma membrane	46.45	54.49
CDX96793	Canola	plasma membrane	46.45	54.49
CDX83927	Canola	plasma membrane	46.99	53.75
CDY21766	Canola	plasma membrane	40.44	51.03
CDX81802	Canola	plasma membrane	39.89	49.66
Bra026690.1-P	Field mustard	plasma membrane	39.89	48.99
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	46.99	48.59
KRH21829	Soybean	plasma membrane	41.53	47.5
AT1G53560.1	Thale cress	plasma membrane	38.25	45.75
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	28.96	43.8
CDY24088	Canola	cytosol	35.52	42.48
Bra039680.1-P	Field mustard	cytosol	35.52	42.48
CDX75777	Canola	cytosol	32.24	42.45
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	37.7	42.07
Zm00001d039619_P003	Maize	cytosol	32.24	40.97
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	36.61	40.85
CDX97586	Canola	cytosol	30.6	40.0
CDX98477	Canola	cytosol	30.05	39.57
KRH13519	Soybean	cytosol	37.16	39.31
Zm00001d037067_P001	Maize	cytosol, plasma membrane, plastid, vacuole	34.43	39.13
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	27.87	38.64
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	46.45	33.73
Solyc07g061970.2.1	Tomato	cytosol	35.52	33.33
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	36.07	29.73

Protein Annotations

EnsemblPlants:Zm00001d011536_P001	EnsemblPlants:Zm00001d011536_T001	EnsemblPlantsGene:Zm00001d011536	EntrezGene:103636155	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0016020	GO:GO:0016021	InterPro:50S_L18Ae/Ribosomal_L18a/L20
PANTHER:PTHR10052	PANTHER:PTHR10052:SF16	ProteinID:AQK97146.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00022206FE
UniProt:K7W049	MapMan:35.2	:	:	:	:

Description

Ribosomal protein L18ae family

Coordinates

chr8:-:153754155..153756490

Molecular Weight (calculated)

19431.3 Da

IEP (calculated)

8.276

GRAVY (calculated)

0.011

Length

183 amino acids

Sequence
(BLAST)

001: MGGQMPDADG KARSADSSSS YGYPPSAPPQ HQYGTFGPPS GASGEFPQPA VGFPQPAAPP GMQHYPQPPP ASYAVYPPPQ QPYSAAAPYY AQGYQIAQGY
101: IPVVEGRPVR IRPLPCCGLG MGWFLFIIGF FFAAIPWYLG AFVLICVRVR DYREKPGYVA CTIAASLAAI AVLLGATKGA EVW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.