Factsheet for VIT_19s0135g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 5
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	extracellular, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_10s0003g01830.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G17080.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G17080.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03160.t01	Wine grape	plasma membrane	60.84	60.0
KRH21829	Soybean	plasma membrane	65.73	58.75
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	61.54	57.89
AT1G17080.1	Thale cress	plasma membrane	62.24	57.79
CDX96793	Canola	plasma membrane	61.54	56.41
Bra040984.1-P	Field mustard	plasma membrane	61.54	56.41
CDX83927	Canola	plasma membrane	62.24	55.62
CDY21766	Canola	plasma membrane	55.94	55.17
CDX81802	Canola	plasma membrane	55.94	54.42
AT1G53560.1	Thale cress	plasma membrane	57.34	53.59
Bra026690.1-P	Field mustard	plasma membrane	55.24	53.02
Os05t0564800-01	Rice	plasma membrane	46.85	52.76
CDY24088	Canola	cytosol	55.24	51.63
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	53.85	50.99
Bra039680.1-P	Field mustard	cytosol	54.55	50.98
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	58.04	50.61
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	58.04	50.61
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	62.24	50.28
Zm00001d009578_P001	Maize	plasma membrane	58.74	50.0
Os01t0242900-01	Rice	plasma membrane	54.55	50.0
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	50.35	49.32
TraesCS3D01G171700.1	Wheat	cytosol, plasma membrane, plastid	51.75	49.01
EES18686	Sorghum	plasma membrane	59.44	48.85
KRH13519	Soybean	cytosol	58.74	48.55
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	40.56	47.93
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	35.66	45.95
Os01t0667100-01	Rice	plasma membrane	59.44	45.95
Zm00001d039619_P003	Maize	cytosol	46.15	45.83
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	41.96	45.45
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	57.34	43.85
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	56.64	43.32
Zm00001d011536_P001	Maize	plasma membrane	55.24	43.17
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	55.24	42.47
CDX75777	Canola	cytosol	41.26	42.45
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	54.55	41.71
CDX98477	Canola	cytosol	39.86	41.01
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	55.24	40.72
CDX97586	Canola	cytosol	39.86	40.71
GSMUA_Achr6P13730_001	Banana	plasma membrane	60.84	40.47
Solyc07g061970.2.1	Tomato	cytosol	53.85	39.49
TraesCS1A01G399600.1	Wheat	cytosol	52.45	38.86
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	61.54	34.92
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	53.15	34.23

Protein Annotations

EntrezGene:100260767	wikigene:100260767	MapMan:35.2	InterPro:50S_L18Ae/Ribosomal_L18a/L20	ProteinID:CBI22126	ProteinID:CBI22126.3
UniProt:D7SX30	EMBL:FN595237	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	EntrezGene:LOC100260767
wikigene:LOC100260767	PANTHER:PTHR10052	PANTHER:PTHR10052:SF30	TIGR:TC51934	TMHMM:TMhelix	UniParc:UPI00015CD2C6
ArrayExpress:VIT_19s0135g00070	EnsemblPlantsGene:VIT_19s0135g00070	EnsemblPlants:VIT_19s0135g00070.t01	unigene:Vvi.8987	RefSeq:XP_002268796	RefSeq:XP_002268796.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:14642768..14652446

Molecular Weight (calculated)

15391.6 Da

IEP (calculated)

7.282

GRAVY (calculated)

0.118

Length

143 amino acids

Sequence
(BLAST)

001: MSEESKNRSD QHYGTFQGVP TYSQPPAVGF PQPVPPPGAA EPSAPPPPPP QYYAHGYQAV PGYAVAEGTP VRERRLPCCG IGLGWFLFII GFFLAAVPWY
101: VGFFLLLCAR VDYREKPGYI ACTIAAILAT IAIIFGVTKG TGE

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.