Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 5
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g016190.2.1 | Tomato | extracellular, plasma membrane, vacuole | 30.34 | 68.75 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 60.0 | 60.84 |
| Solyc02g070630.2.1 | Tomato | cytosol, plasma membrane, plastid | 62.07 | 58.44 |
| PGSC0003DMT400021361 | Potato | cytosol, mitochondrion, plasma membrane | 61.38 | 57.79 |
| KRH11200 | Soybean | cytosol, peroxisome, plasma membrane | 51.03 | 52.86 |
| CDX99868 | Canola | cytosol | 46.21 | 43.51 |
| Bra032348.1-P | Field mustard | cytosol | 47.59 | 40.83 |
| CDY26303 | Canola | cytosol | 47.59 | 40.83 |
| KRH21052 | Soybean | cytosol | 34.48 | 35.46 |
Protein Annotations
| MapMan:35.1 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | UniProt:A5AX92 | EMBL:AM439004 | ProteinID:CAN82659 | ProteinID:CAN82659.1 |
| ProteinID:CBI30858 | ProteinID:CBI30858.3 | EMBL:FN595992 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 |
| PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | TIGR:TC60469 | TMHMM:TMhelix | UniParc:UPI0001523E30 | ArrayExpress:VIT_10s0003g03160 |
| EnsemblPlantsGene:VIT_10s0003g03160 | EnsemblPlants:VIT_10s0003g03160.t01 | unigene:Vvi.6815 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr10:-:5295718..5301804
Molecular Weight (calculated)
15686.3 Da
IEP (calculated)
8.717
GRAVY (calculated)
0.239
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEGKSRGL SGQQSNQIPY GTFQGVANYP PLPPAHHPQP VIGIPQPVPP PGYYSHGYQT VPGYAVVEGR PVRERRLPCC GIGIGWLLFI IGFFCAAIPW
101: YIGAFILLCV RVDYREKPGL IACTIATVLA VIAITLGVTK GTHAW
101: YIGAFILLCV RVDYREKPGL IACTIATVLA VIAITLGVTK GTHAW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.