Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26303 | Canola | cytosol | 79.22 | 72.19 |
| Solyc08g016190.2.1 | Tomato | extracellular, plasma membrane, vacuole | 19.48 | 46.88 |
| VIT_10s0003g03160.t01 | Wine grape | plasma membrane | 43.51 | 46.21 |
| KRH11200 | Soybean | cytosol, peroxisome, plasma membrane | 38.31 | 42.14 |
| Solyc02g070630.2.1 | Tomato | cytosol, plasma membrane, plastid | 40.91 | 40.91 |
| PGSC0003DMT400021361 | Potato | cytosol, mitochondrion, plasma membrane | 39.61 | 39.61 |
| CDX96793 | Canola | plasma membrane | 38.31 | 37.82 |
| CDX83927 | Canola | plasma membrane | 38.96 | 37.5 |
| CDY24088 | Canola | cytosol | 36.36 | 36.6 |
| CDY21766 | Canola | plasma membrane | 34.42 | 36.55 |
| CDX81802 | Canola | plasma membrane | 34.42 | 36.05 |
| CDX98477 | Canola | cytosol | 31.17 | 34.53 |
| CDX97586 | Canola | cytosol | 31.17 | 34.29 |
| CDX75777 | Canola | cytosol | 30.52 | 33.81 |
| KRH21052 | Soybean | cytosol | 29.22 | 31.91 |
Protein Annotations
| EnsemblPlants:CDX99868 | EnsemblPlantsGene:GSBRNA2T00108593001 | GO:A0A078EKI3 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 |
| ProteinID:CDX99868 | ProteinID:CDX99868.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB1883 | MapMan:35.1 |
Description
BnaC05g22900D
Coordinates
chrLK031914:-:682765..684194
Molecular Weight (calculated)
16913.5 Da
IEP (calculated)
5.956
GRAVY (calculated)
0.247
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEAAKPRD TTINQQQQYY YGTFQGVANY PPPAPPPLPH QPIVTSPLLP PVHGHGGGFV NYAQGYPVVP EYTVVEVRPV REHDVPCCGF GMGWFLFIMG
101: FLFGGIPWYL GAVIILFTSV DHREKAGYVA CSVASVVYLI AVMLGMAGNI NIIW
101: FLFGGIPWYL GAVIILFTSV DHREKAGYVA CSVASVVYLI AVMLGMAGNI NIIW
001: MDEEAAKPRD STVNQQHQYY YGTFQGVANF PTPTPPPQFM QPQHPITTFP GHAYQNLQGH GGGVNYAQGF PVVVPDYTVV EVRPMIEHEL PCCGLGMGWF
101: LFIMGFLFGG IPWYLGAFIV LVTSVDHREK AGYVACSIAS VVYLIAVMLG MTGDINIW
101: LFIMGFLFGG IPWYLGAFIV LVTSVDHREK AGYVACSIAS VVYLIAVMLG MTGDINIW
Arabidopsis Description
RPL18AA60S ribosomal protein L18A-1 [Source:UniProtKB/TrEMBL;Acc:A8MRF3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.