Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G260000.1 | Wheat | extracellular | 99.13 | 99.13 |
| TraesCS2A01G264000.1 | Wheat | extracellular | 96.96 | 96.96 |
| TraesCS6B01G370600.1 | Wheat | extracellular | 83.48 | 84.21 |
| HORVU2Hr1G062880.3 | Barley | plastid | 93.91 | 82.13 |
| EES15044 | Sorghum | extracellular | 74.35 | 76.0 |
| Os08t0434100-01 | Rice | extracellular | 74.35 | 74.67 |
| Zm00001d032186_P001 | Maize | extracellular | 73.91 | 74.24 |
| GSMUA_Achr5P23330_001 | Banana | extracellular | 56.52 | 57.27 |
| KRH70736 | Soybean | extracellular | 55.65 | 56.39 |
| GSMUA_Achr7P21030_001 | Banana | extracellular | 53.91 | 55.86 |
| Bra026570.1-P | Field mustard | extracellular | 54.78 | 55.02 |
| CDY62181 | Canola | extracellular | 54.78 | 55.02 |
| AT2G02990.1 | Thale cress | extracellular | 54.78 | 54.78 |
| CDY09344 | Canola | extracellular | 55.22 | 54.74 |
| KRG89631 | Soybean | endoplasmic reticulum, extracellular | 53.48 | 54.19 |
| CDY45186 | Canola | extracellular | 53.91 | 54.15 |
| Bra024795.1-P | Field mustard | extracellular | 53.91 | 54.15 |
| CDY03023 | Canola | extracellular | 53.48 | 53.71 |
| KRH74869 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 55.22 | 53.36 |
| GSMUA_Achr4P00460_001 | Banana | endoplasmic reticulum, extracellular, plastid | 53.04 | 46.21 |
| TraesCS2B01G182900.1 | Wheat | extracellular | 43.91 | 42.08 |
| TraesCS1B01G170200.1 | Wheat | extracellular | 33.91 | 31.84 |
| TraesCS1B01G170100.1 | Wheat | endoplasmic reticulum, extracellular | 30.43 | 27.34 |
| TraesCS3B01G430300.1 | Wheat | unclear | 31.3 | 25.81 |
| TraesCS3B01G430200.1 | Wheat | endoplasmic reticulum, extracellular, mitochondrion | 30.43 | 24.73 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0016787 | GO:GO:0033897 | InterPro:IPR036430 | PFAM:PF00445 |
| ScanProsite:PS00530 | ScanProsite:PS00531 | PFscan:PS51257 | PANTHER:PTHR11240 | PANTHER:PTHR11240:SF35 | InterPro:RNase_T2-like |
| InterPro:RNase_T2-like_sf | InterPro:RNase_T2_His_AS_1 | InterPro:RNase_T2_His_AS_2 | InterPro:Ribonuclease_T2_eukaryotic | SUPFAM:SSF55895 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:TraesCS2B01G278200 | EnsemblPlants:TraesCS2B01G278200.1 | TIGR:cd01061 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:384109553..384110511
Molecular Weight (calculated)
25217.6 Da
IEP (calculated)
6.374
GRAVY (calculated)
-0.286
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLQCSLVLL IALSVGCAAA QESGKHAGYD FFYLVLQWPG SYCDTKQSCC YPRSGKPAAD FGIHGLWPNR DDGSYPQNCN PDSAFDPSKV SDILSSMRSS
101: WPTLACPTND GLRFWAHEWE KHGTCAQNLF NEHGYFQAAL RLRGQLRVLD ALATAGISPD GGYYTMGAIK GAIQEGTGFA PHVDCNRDES GNSQLFQLYF
201: CVHADASRFV ECPVQPGGRP CGNRIEFPAF
101: WPTLACPTND GLRFWAHEWE KHGTCAQNLF NEHGYFQAAL RLRGQLRVLD ALATAGISPD GGYYTMGAIK GAIQEGTGFA PHVDCNRDES GNSQLFQLYF
201: CVHADASRFV ECPVQPGGRP CGNRIEFPAF
001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
Arabidopsis Description
RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.