CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06324
KRH06326
KRH06327
KRH11076
KRH21197
KRH22653
KRH26664
KRH42923
KRH42926
KRH45251
KRH47747
KRH47748
KRH47750
KRH59035
KRH59036
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	KRH06324	AT1G01010.1	21798944
AT2G02990.1	KRH06326	AT1G01010.1	21798944
AT2G02990.1	KRH06327	AT1G01010.1	21798944
AT2G02990.1	KRH47747	AT1G01010.1	21798944
AT2G02990.1	KRH47748	AT1G01010.1	21798944
AT2G02990.1	KRH47750	AT1G01010.1	21798944
AT2G02990.1	KRH65384	AT3G60600.1	21798944
AT2G02990.1	KRH76164	AT3G60600.1	21798944
AT2G02990.1	KRH11076	AT4G19030.1	21798944
AT2G02990.1	KRH21197	AT4G19030.1	21798944
AT2G02990.1	KRH42923	AT4G19030.1	21798944
AT2G02990.1	KRH42926	AT4G19030.1	21798944
AT2G02990.1	KRH45251	AT4G19030.1	21798944
AT2G02990.1	KRH59035	AT4G19030.1	21798944
AT2G02990.1	KRH59036	AT4G19030.1	21798944
AT2G02990.1	KRH22653	AT5G22290.1	21798944
AT2G02990.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70736	Soybean	extracellular	84.45	88.55
KRG89631	Soybean	endoplasmic reticulum, extracellular	76.05	79.74
Bra024795.1-P	Field mustard	extracellular	65.13	67.69
CDY45186	Canola	extracellular	65.13	67.69
AT2G02990.1	Thale cress	extracellular	65.13	67.39
CDY03023	Canola	extracellular	64.29	66.81
CDY62181	Canola	extracellular	64.29	66.81
Bra026570.1-P	Field mustard	extracellular	64.29	66.81
CDY09344	Canola	extracellular	64.29	65.95
GSMUA_Achr5P23330_001	Banana	extracellular	61.76	64.76
GSMUA_Achr7P21030_001	Banana	extracellular	59.66	63.96
KRH74871	Soybean	endoplasmic reticulum	60.08	63.27
KRH70737	Soybean	extracellular	59.66	62.83
EES15044	Sorghum	extracellular	56.72	60.0
TraesCS6D01G320200.1	Wheat	extracellular	55.88	58.33
TraesCS6A01G339600.1	Wheat	extracellular	55.88	58.33
Zm00001d032186_P001	Maize	extracellular	55.88	58.08
TraesCS6B01G370600.1	Wheat	extracellular	55.46	57.89
Os08t0434100-01	Rice	extracellular	54.62	56.77
TraesCS2D01G260000.1	Wheat	extracellular	53.78	55.65
HORVU6Hr1G081930.1	Barley	cytosol	17.65	55.26
TraesCS2B01G278200.1	Wheat	extracellular	53.36	55.22
TraesCS2A01G264000.1	Wheat	extracellular	53.36	55.22
HORVU0Hr1G017230.3	Barley	extracellular	52.1	54.15
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	58.82	53.03
KRG89632	Soybean	extracellular	52.52	52.52
HORVU2Hr1G062880.3	Barley	plastid	53.36	48.29
HORVU6Hr1G081950.3	Barley	extracellular	39.5	46.31
KRH47963	Soybean	nucleus	36.55	32.22
KRH06524	Soybean	extracellular	34.87	30.86
KRH67902	Soybean	extracellular	29.41	30.3
KRH70036	Soybean	extracellular	26.05	26.84
KRH70040	Soybean	extracellular	25.21	25.97
KRH70039	Soybean	extracellular	25.21	25.97
KRH70037	Soybean	extracellular	25.21	25.64

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	UniProt:A0A0R0LE13	EMBL:ACUP02000083	EnsemblPlantsGene:GLYMA_01G048200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033897	GO:GO:0090502
InterPro:IPR036430	EnsemblPlants:KRH74869	ProteinID:KRH74869	ProteinID:KRH74869.1	PFAM:PF00445	ScanProsite:PS00530
ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1
InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	TMHMM:TMhelix	UniParc:UPI0006EDFC3B	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:5615672..5619252

Molecular Weight (calculated)

26478.0 Da

IEP (calculated)

4.593

GRAVY (calculated)

-0.330

Length

238 amino acids

Sequence
(BLAST)

001: MTEVTKKRGD KMELKESILI KLLLLLPFFS VLCASPDFNF FYFVQQWPGS YCDTQKSCCY PTTGKPAADF GIHGLWPNYN DGTYPSNCDP NNPFNPSGIS
101: DLTSSLQSNW PTLACPSSDG ITFWTHEWDK HGTCSESVLK QHDYFEAALN LRQKANLLQA LTNAGIQPDG QSYSLSDIKE AIKNGIGYAP FIECNVDSSG
201: NSQLYQVYLC VNTSGSDFME CPVFPRSKCG SDIEFPSF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.