CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70737	Soybean	extracellular	94.25	94.25
AT1G14220.1	Thale cress	extracellular	69.47	68.86
Bra012439.1-P	Field mustard	extracellular	66.37	67.57
CDY20583	Canola	extracellular	66.37	67.57
CDY40267	Canola	extracellular	66.37	67.57
AT1G26820.1	Thale cress	extracellular	64.16	65.32
KRG89631	Soybean	endoplasmic reticulum, extracellular	65.04	64.76
Bra026846.1-P	Field mustard	extracellular	64.16	63.88
CDY33761	Canola	extracellular	64.16	63.88
GSMUA_Achr7P21030_001	Banana	extracellular	61.95	63.06
CDX96863	Canola	extracellular	63.27	62.72
CDX84041	Canola	extracellular	62.83	62.28
KRH70736	Soybean	extracellular	62.39	62.11
GSMUA_Achr5P23330_001	Banana	extracellular	61.95	61.67
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	63.27	60.08
Solyc05g007940.2.1	Tomato	extracellular	61.5	58.65
CDY33762	Canola	peroxisome	52.65	54.84
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	60.18	51.52
KRG89632	Soybean	extracellular	53.1	50.42
KRH67902	Soybean	extracellular	34.07	33.33
KRH06524	Soybean	extracellular	36.28	30.48
KRH47963	Soybean	nucleus	35.84	30.0
KRH70036	Soybean	extracellular	26.99	26.41
KRH70039	Soybean	extracellular	26.55	25.97
KRH70040	Soybean	extracellular	26.55	25.97
KRH70037	Soybean	extracellular	25.22	24.36
CDX81621	Canola	extracellular, nucleus, peroxisome	60.62	21.41

Protein Annotations

EntrezGene:100778239	Gene3D:3.90.730.10	MapMan:35.1	EMBL:ACUP02000083	EnsemblPlantsGene:GLYMA_01G048400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033897	GO:GO:0090502
UniProt:I1J5R4	InterPro:IPR036430	EnsemblPlants:KRH74871	ProteinID:KRH74871	ProteinID:KRH74871.1	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF19	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf
InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	UniParc:UPI0002337A1F

Description

hypothetical protein

Coordinates

chr1:+:5627602..5631187

Molecular Weight (calculated)

25868.4 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.466

Length

226 amino acids

Sequence
(BLAST)

001: MKPNFSFLFK LLILQYLAVL SISQEFDFFY FVQQWPGAYC DTKQSCCYPK TGKPSADFSI HGLWPNYNDG SWPSNCDPDS VFDKSQISDL ISNMEKDWPS
101: LSCPSSNGMR FWSHEWEKHG TCAESELDQR EYFETTLKLK QKVNLLRILK NAGIEPDDGF YTLESISEAI KEGTGFTPGI ECNRDSARNS QLYQVYMCVD
201: TSGSNLIECP VLPRSKCGEQ IQFPKF

Best Arabidopsis Sequence Match ( AT1G14220.1 )
(BLAST)

001: MGAKGCVNVL LKLLVFQGLF VSRPQEDFDF FYFVLQWPGA YCDTSRACCY PTSGKPAADF GIHGLWPNYN GGSWPSNCDP DSQFDRSQIS DLVSSLKKNW
101: PTLSCPSNEG FNFWEHEWEK HGTCSESVMD QHEYFENALK LKQKANLLQI LKNSGINPDD GFYNLDKITN AIKDGIGFTP GIECNKDPER NAQLHQIYIC
201: VDTSGTEFIE CPVLPRGSCP SQIQFSKF

Arabidopsis Description

F7A19.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI64]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.