Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 9
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40267 | Canola | extracellular | 100.0 | 100.0 |
| CDY20583 | Canola | extracellular | 99.55 | 99.55 |
| AT1G26820.1 | Thale cress | extracellular | 91.89 | 91.89 |
| KRH74871 | Soybean | endoplasmic reticulum | 67.57 | 66.37 |
| KRH70737 | Soybean | extracellular | 66.67 | 65.49 |
| Bra026846.1-P | Field mustard | extracellular | 60.36 | 59.03 |
| GSMUA_Achr7P21030_001 | Banana | extracellular | 59.01 | 59.01 |
| Bra024795.1-P | Field mustard | extracellular | 59.46 | 57.64 |
| GSMUA_Achr5P23330_001 | Banana | extracellular | 58.56 | 57.27 |
| Bra026570.1-P | Field mustard | extracellular | 58.56 | 56.77 |
| Solyc05g007940.2.1 | Tomato | extracellular | 58.56 | 54.85 |
| GSMUA_Achr4P00460_001 | Banana | endoplasmic reticulum, extracellular, plastid | 58.56 | 49.24 |
| Bra026847.1-P | Field mustard | extracellular | 47.75 | 43.44 |
| Bra032671.1-P | Field mustard | extracellular | 32.43 | 27.17 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | EnsemblPlantsGene:Bra012439 | EnsemblPlants:Bra012439.1 | EnsemblPlants:Bra012439.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0033897 | GO:GO:0090502 |
| InterPro:IPR036430 | UniProt:M4D7H9 | PFAM:PF00445 | ScanProsite:PS00530 | ScanProsite:PS00531 | PANTHER:PTHR11240 |
| PANTHER:PTHR11240:SF19 | InterPro:RNase_T2-like | InterPro:RNase_T2-like_sf | InterPro:RNase_T2_His_AS_1 | InterPro:RNase_T2_His_AS_2 | InterPro:Ribonuclease_T2_eukaryotic |
| SUPFAM:SSF55895 | SignalP:SignalP-noTM | UniParc:UPI0002540B82 | : | : | : |
Description
AT1G26820 (E=3e-128) RNS3 | RNS3 (RIBONUCLEASE 3); RNA binding / endoribonuclease/ ribonuclease T2
Coordinates
chrA07:-:7589028..7590063
Molecular Weight (calculated)
25407.9 Da
IEP (calculated)
6.015
GRAVY (calculated)
-0.410
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFFLCILAL QQLYVLSVAQ DFDFFYFVVQ WPGAYCDSRH SCCYPKTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSTFDE LRVSDLMSNL QREWPTLSCP
101: SNDGVHFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEIK DIERAIKEAI GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: NFINCPVMPH GRCDSRVQFP KF
101: SNDGVHFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEIK DIERAIKEAI GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: NFINCPVMPH GRCDSRVQFP KF
001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
Arabidopsis Description
RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.