Factsheet for Bra024795.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra020182.1-P
Bra033296.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	Bra033296.1-P	AT1G01010.1	21798944
AT2G02990.1	Bra003423.1-P	AT3G60600.1	21798944
AT2G02990.1	Bra007547.1-P	AT3G60600.1	21798944
AT2G02990.1	Bra014481.1-P	AT3G60600.1	21798944
AT2G02990.1	Bra012567.1-P	AT4G19030.1	21798944
AT2G02990.1	Bra013361.1-P	AT4G19030.1	21798944
AT2G02990.1	Bra002403.1-P	AT5G22290.1	21798944
AT2G02990.1	Bra006619.1-P	AT5G22290.1	21798944
AT2G02990.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45186	Canola	extracellular	100.0	100.0
CDY03023	Canola	extracellular	97.38	97.38
AT2G02990.1	Thale cress	extracellular	88.21	87.83
Bra026570.1-P	Field mustard	extracellular	85.59	85.59
KRH70736	Soybean	extracellular	67.69	68.28
KRG89631	Soybean	endoplasmic reticulum, extracellular	65.5	66.08
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	67.69	65.13
GSMUA_Achr5P23330_001	Banana	extracellular	63.76	64.32
GSMUA_Achr7P21030_001	Banana	extracellular	59.83	61.71
Bra012439.1-P	Field mustard	extracellular	57.64	59.46
EES15044	Sorghum	extracellular	56.33	57.33
Bra026846.1-P	Field mustard	extracellular	56.33	56.83
TraesCS6A01G339600.1	Wheat	extracellular	55.02	55.26
Zm00001d032186_P001	Maize	extracellular	55.02	55.02
TraesCS6D01G320200.1	Wheat	extracellular	54.59	54.82
TraesCS6B01G370600.1	Wheat	extracellular	54.15	54.39
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	62.45	54.17
TraesCS2B01G278200.1	Wheat	extracellular	54.15	53.91
TraesCS2A01G264000.1	Wheat	extracellular	53.71	53.48
TraesCS2D01G260000.1	Wheat	extracellular	53.71	53.48
HORVU6Hr1G081930.1	Barley	cytosol	17.47	52.63
Os08t0434100-01	Rice	extracellular	51.97	51.97
HORVU0Hr1G017230.3	Barley	extracellular	51.09	51.09
HORVU2Hr1G062880.3	Barley	plastid	55.02	47.91
HORVU6Hr1G081950.3	Barley	extracellular	38.43	43.35
Bra026847.1-P	Field mustard	extracellular	45.85	43.03
Bra032671.1-P	Field mustard	extracellular	33.62	29.06

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	EnsemblPlantsGene:Bra024795	EnsemblPlants:Bra024795.1	EnsemblPlants:Bra024795.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033897	GO:GO:0090502
InterPro:IPR036430	UniProt:M4E7N9	PFAM:PF00445	ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240
PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic
SUPFAM:SSF55895	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253F86B	SEG:seg	:

Description

AT2G02990 (E=2e-104) RNS1, ATRNS1 | RNS1 (RIBONUCLEASE 1); endoribonuclease/ ribonuclease

Coordinates

chrA06:-:23474304..23475289

Molecular Weight (calculated)

25400.6 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.314

Length

229 amino acids

Sequence
(BLAST)

001: MKLLHASLCL ISLLLILPSI FAASSSEDFD FFYFVQQWPG SYCDTQRSCC FPTSGKPAAD FGIHGLWPNY KDGTYPSNCD NTKPFDSSSI SDLISSMQKS
101: WPTLACPSGS GETFWEHEWE KHGTCSESVI DQHEYFQTAL NLKQKADLLG ALTKAGINPD GKSYSIESIR DSIKESTGFT PWIQCNTDES GNSQLYQVYL
201: CVDRSGSGLI ECPVFPRGKC GDEINFPSF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.