CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06324
KRH06326
KRH06327
KRH11076
KRH21197
KRH22653
KRH26664
KRH42923
KRH42926
KRH45251
KRH47747
KRH47748
KRH47750
KRH59035
KRH59036
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	KRH06324	AT1G01010.1	21798944
AT2G02990.1	KRH06326	AT1G01010.1	21798944
AT2G02990.1	KRH06327	AT1G01010.1	21798944
AT2G02990.1	KRH47747	AT1G01010.1	21798944
AT2G02990.1	KRH47748	AT1G01010.1	21798944
AT2G02990.1	KRH47750	AT1G01010.1	21798944
AT2G02990.1	KRH65384	AT3G60600.1	21798944
AT2G02990.1	KRH76164	AT3G60600.1	21798944
AT2G02990.1	KRH11076	AT4G19030.1	21798944
AT2G02990.1	KRH21197	AT4G19030.1	21798944
AT2G02990.1	KRH42923	AT4G19030.1	21798944
AT2G02990.1	KRH42926	AT4G19030.1	21798944
AT2G02990.1	KRH45251	AT4G19030.1	21798944
AT2G02990.1	KRH59035	AT4G19030.1	21798944
AT2G02990.1	KRH59036	AT4G19030.1	21798944
AT2G02990.1	KRH22653	AT5G22290.1	21798944
AT2G02990.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	88.55	84.45
KRG89631	Soybean	endoplasmic reticulum, extracellular	80.18	80.18
AT2G02990.1	Thale cress	extracellular	69.16	68.26
Bra026570.1-P	Field mustard	extracellular	68.72	68.12
CDY62181	Canola	extracellular	68.72	68.12
Bra024795.1-P	Field mustard	extracellular	68.28	67.69
CDY45186	Canola	extracellular	68.28	67.69
CDY09344	Canola	extracellular	68.72	67.24
CDY03023	Canola	extracellular	67.4	66.81
GSMUA_Achr5P23330_001	Banana	extracellular	65.64	65.64
GSMUA_Achr7P21030_001	Banana	extracellular	61.67	63.06
KRH74871	Soybean	endoplasmic reticulum	62.11	62.39
KRH70737	Soybean	extracellular	61.67	61.95
EES15044	Sorghum	extracellular	59.03	59.56
TraesCS6D01G320200.1	Wheat	extracellular	59.47	59.21
TraesCS6A01G339600.1	Wheat	extracellular	59.03	58.77
TraesCS6B01G370600.1	Wheat	extracellular	58.59	58.33
Zm00001d032186_P001	Maize	extracellular	58.15	57.64
Os08t0434100-01	Rice	extracellular	57.27	56.77
HORVU6Hr1G081930.1	Barley	cytosol	18.94	56.58
TraesCS2D01G260000.1	Wheat	extracellular	56.83	56.09
TraesCS2B01G278200.1	Wheat	extracellular	56.39	55.65
TraesCS2A01G264000.1	Wheat	extracellular	56.39	55.65
HORVU0Hr1G017230.3	Barley	extracellular	55.07	54.59
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	62.56	53.79
KRG89632	Soybean	extracellular	54.63	52.1
HORVU2Hr1G062880.3	Barley	plastid	56.39	48.67
HORVU6Hr1G081950.3	Barley	extracellular	40.97	45.81
KRH47963	Soybean	nucleus	39.21	32.96
KRH67902	Soybean	extracellular	32.6	32.03
KRH06524	Soybean	extracellular	37.89	31.97
KRH70039	Soybean	extracellular	27.75	27.27
KRH70036	Soybean	extracellular	27.75	27.27
KRH70040	Soybean	extracellular	27.31	26.84
KRH70037	Soybean	extracellular	27.31	26.5

Protein Annotations

EntrezGene:100782011	Gene3D:3.90.730.10	MapMan:35.1	EMBL:ACUP02000791	EnsemblPlantsGene:GLYMA_02G107900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033897	GO:GO:0090502
UniProt:I1JE49	InterPro:IPR036430	EnsemblPlants:KRH70736	ProteinID:KRH70736	ProteinID:KRH70736.1	PFAM:PF00445
ScanProsite:PS00530	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1
InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	UniParc:UPI0002337743	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:10303196..10305744

Molecular Weight (calculated)

25081.2 Da

IEP (calculated)

4.275

GRAVY (calculated)

-0.188

Length

227 amino acids

Sequence
(BLAST)

001: MEFKGSVFIK LLLLLHFFSV LCASQDFDFF YFVQQWPGSY CDTQKSCCYP TKGKPAADFG IHGLWPNYND GKYPSNCDPN NPFDPSGISD LTSSLESNWP
101: TLACPSGDGI EFWTHEWDIH GTCSESVLKQ HDYFEAALNL KQKANLLQAL TSAGIQADGQ SYSLSEIKGA IEGAIGFTPF IECNVDSSGN SQLYQVYLCV
201: NTSGSDFIEC PVFPRGKCGS DIEFPSF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.